proBAMr
This is thereleased version of proBAMr; for the devel version, seeproBAMr.
Generating SAM file for PSMs in shotgun proteomics data
Bioconductor version: Release (3.22)
Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.
Author: Xiaojing Wang
Maintainer: Xiaojing Wang <xiaojing.wang at vanderbilt.edu>
Citation (from within R, enter
citation("proBAMr")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("proBAMr")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("proBAMr")| Introduction to proBAMr | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ImmunoOncology,MassSpectrometry,Proteomics,Software,Visualization |
| Version | 1.44.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (11 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.0.1),IRanges,AnnotationDbi |
| Imports | GenomicRanges,Biostrings,GenomicFeatures,txdbmaker,rtracklayer |
| System Requirements | |
| URL |
See More
| Suggests | GenomeInfoDbData,RUnit,BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | proBAMr_1.44.0.tar.gz |
| Windows Binary (x86_64) | proBAMr_1.44.0.zip (64-bit only) |
| macOS Binary (x86_64) | proBAMr_1.44.0.tgz |
| macOS Binary (arm64) | proBAMr_1.44.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/proBAMr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/proBAMr |
| Bioc Package Browser | https://code.bioconductor.org/browse/proBAMr/ |
| Package Short Url | https://bioconductor.org/packages/proBAMr/ |
| Package Downloads Report | Download Stats |