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ncRNAtools
This is thereleased version of ncRNAtools; for the devel version, seencRNAtools.
An R toolkit for non-coding RNA
Bioconductor version: Release (3.22)
ncRNAtools provides a set of basic tools for handling and analyzing non-coding RNAs. These include tools to access the RNAcentral database and to predict and visualize the secondary structure of non-coding RNAs. The package also provides tools to read, write and interconvert the file formats most commonly used for representing such secondary structures.
Author: Lara Selles Vidal [cre, aut]
ORCID: 0000-0003-2537-6824, Rafael Ayala [aut] ORCID: 0000-0002-9332-4623, Guy-Bart Stan [aut] ORCID: 0000-0002-5560-902X, Rodrigo Ledesma-Amaro [aut] ORCID: 0000-0003-2631-5898
Maintainer: Lara Selles Vidal <lara.selles at oist.jp>
citation("ncRNAtools")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("ncRNAtools")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ncRNAtools")| rfaRm | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport,FunctionalGenomics,Software,StructuralPrediction,ThirdPartyClient,Visualization |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (5 years) |
| License | GPL-3 |
| Depends | |
| Imports | httr,xml2, utils, methods, grDevices,ggplot2,IRanges,GenomicRanges,S4Vectors |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/LaraSellesVidal/ncRNAtools/issues |
See More
| Suggests | knitr,BiocStyle,rmarkdown,RUnit,BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | ncRNAtools_1.20.0.tar.gz |
| Windows Binary (x86_64) | ncRNAtools_1.20.0.zip |
| macOS Binary (x86_64) | ncRNAtools_1.20.0.tgz |
| macOS Binary (arm64) | ncRNAtools_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ncRNAtools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ncRNAtools |
| Bioc Package Browser | https://code.bioconductor.org/browse/ncRNAtools/ |
| Package Short Url | https://bioconductor.org/packages/ncRNAtools/ |
| Package Downloads Report | Download Stats |