matchBox
This is thereleased version of matchBox; for the devel version, seematchBox.
Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.
Bioconductor version: Release (3.22)
The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.
Author: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <agupta52 at jhu.edu>
Maintainer: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <agupta52 at jhu.edu>
citation("matchBox")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("matchBox")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("matchBox")| Working with the matchBox package | R Script | |
| Reference Manual |
Details
| biocViews | Annotation,Microarray,MultipleComparison,Software,Visualization |
| Version | 1.52.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (13 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.8.0) |
| Imports | |
| System Requirements | |
| URL |
See More
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| Depends On Me | |
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| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | matchBox_1.52.0.tar.gz |
| Windows Binary (x86_64) | matchBox_1.52.0.zip |
| macOS Binary (x86_64) | matchBox_1.52.0.tgz |
| macOS Binary (arm64) | matchBox_1.52.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/matchBox |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/matchBox |
| Bioc Package Browser | https://code.bioconductor.org/browse/matchBox/ |
| Package Short Url | https://bioconductor.org/packages/matchBox/ |
| Package Downloads Report | Download Stats |