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chevreulPlot
This is thereleased version of chevreulPlot; for the devel version, seechevreulPlot.
Plots used in the chevreulPlot package
Bioconductor version: Release (3.22)
Tools for plotting SingleCellExperiment objects in the chevreulPlot package. Includes functions for analysis and visualization of single-cell data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.
Author: Kevin Stachelek [aut, cre]
ORCID: 0000-0003-2085-695X, Bhavana Bhat [aut]
Maintainer: Kevin Stachelek <kevin.stachelek at gmail.com>
citation("chevreulPlot")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("chevreulPlot")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chevreulPlot")| Preprocessing | HTML | R Script |
| Visualization | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Coverage,DataImport,DimensionReduction,GeneExpression,Normalization,Preprocessing,QualityControl,RNASeq,Sequencing,SingleCell,Software,Transcription,Transcriptomics,Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.21 (R-4.5) (0.5 years) |
| License | MIT + fileLICENSE |
| Depends | R (>= 4.5.0),SingleCellExperiment,chevreulProcess |
| Imports | base,cluster,clustree,ComplexHeatmap(>= 2.5.4),circlize,dplyr,EnsDb.Hsapiens.v86,forcats,fs,ggplot2, grid,plotly,purrr,S4Vectors,scales,scater,scran,scuttle, stats,stringr,tibble,tidyr, utils,wiggleplotr(>= 1.13.1),tidyselect,patchwork |
| System Requirements | |
| URL | https://github.com/whtns/chevreulPlothttps://whtns.github.io/chevreulPlot/ |
| Bug Reports | https://github.com/cobriniklab/chevreulPlot/issues |
See More
| Suggests | BiocStyle,knitr,RefManageR,rmarkdown,testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | chevreulShiny |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | chevreulPlot_1.2.0.tar.gz |
| Windows Binary (x86_64) | chevreulPlot_1.2.0.zip |
| macOS Binary (x86_64) | chevreulPlot_1.2.0.tgz |
| macOS Binary (arm64) | chevreulPlot_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/chevreulPlot |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/chevreulPlot |
| Bioc Package Browser | https://code.bioconductor.org/browse/chevreulPlot/ |
| Package Short Url | https://bioconductor.org/packages/chevreulPlot/ |
| Package Downloads Report | Download Stats |