branchpointer

This is thereleased version of branchpointer; for the devel version, seebranchpointer.

Prediction of intronic splicing branchpoints

DOI: 10.18129/B9.bioc.branchpointer

Bioconductor version: Release (3.22)

Predicts branchpoint probability for sites in intronic branchpoint windows. Queries can be supplied as intronic regions; or to evaluate the effects of mutations, SNPs.

Author: Beth Signal

Maintainer: Beth Signal <b.signal at garvan.org.au>

Citation (from within R, entercitation("branchpointer")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("branchpointer")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GenomeAnnotation,GenomicVariation,MotifAnnotation,Software
Version	1.35.1
In Bioconductor since	BioC 3.5 (R-3.4) (8.5 years)
License	BSD_3_clause + file LICENSE
Depends	caret, R (>= 3.4)
Imports	plyr,kernlab,gbm,stringr,cowplot,ggplot2,biomaRt,Biostrings, parallel, utils, stats,BSgenome.Hsapiens.UCSC.hg38,rtracklayer,GenomicRanges,Seqinfo,IRanges,S4Vectors,data.table
System Requirements
URL

Suggests	knitr,BiocStyle
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Build Report	Build Report

Package Archives

FollowInstallation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)	branchpointer_1.35.1.zip
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/branchpointer
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/branchpointer
Bioc Package Browser	https://code.bioconductor.org/browse/branchpointer/
Package Short Url	https://bioconductor.org/packages/branchpointer/
Package Downloads Report	Download Stats

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