arrayQualityMetrics

This is thereleased version of arrayQualityMetrics; for the devel version, seearrayQualityMetrics.

Quality metrics report for microarray data sets

DOI: 10.18129/B9.bioc.arrayQualityMetrics

Bioconductor version: Release (3.22)

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.

Author: Audrey Kauffmann, Wolfgang Huber

Maintainer: Mike Smith <mike.smith at embl.de>

Citation (from within R, entercitation("arrayQualityMetrics")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("arrayQualityMetrics")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Microarray,OneChannel,QualityControl,ReportWriting,Software,TwoChannel
Version	3.65.0
In Bioconductor since	BioC 2.1 (R-2.6) (18 years)
License	LGPL (>= 2)
Depends
Imports	affy,affyPLM(>= 1.27.3),beadarray,Biobase,genefilter, graphics, grDevices, grid,gridSVG (>= 1.4-3),Hmisc,hwriter,lattice,latticeExtra,limma, methods,RColorBrewer,setRNG, stats, utils,vsn(>= 3.23.3),XML,svglite
System Requirements
URL
Bug Reports	https://github.com/grimbough/arrayQualityMetrics/issues

Suggests	ALLMLL,CCl4,BiocStyle,knitr
Linking To
Enhances
Depends On Me
Imports Me
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Build Report	Build Report

Package Archives

FollowInstallation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)	arrayQualityMetrics_3.65.0.zip
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/arrayQualityMetrics
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/arrayQualityMetrics
Bioc Package Browser	https://code.bioconductor.org/browse/arrayQualityMetrics/
Package Short Url	https://bioconductor.org/packages/arrayQualityMetrics/
Package Downloads Report	Download Stats

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