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UniProt.ws
This is thereleased version of UniProt.ws; for the devel version, seeUniProt.ws.
R Interface to UniProt Web Services
Bioconductor version: Release (3.22)
The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. This package provides a collection of functions for retrieving, processing, and re-packaging UniProt web services. The package makes use of UniProt's modernized REST API and allows mapping of identifiers accross different databases.
Author: Marc Carlson [aut], Csaba Ortutay [ctb], Marcel Ramos [aut, cre]
ORCID: 0000-0002-3242-0582
Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>
citation("UniProt.ws")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("UniProt.ws")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("UniProt.ws")| UniProt.ws: A package for retrieving data from the UniProt web service | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation,BioCarta,GO,Infrastructure,KEGG,Software |
| Version | 2.50.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (12.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.5.0) |
| Imports | AnnotationDbi,BiocFileCache,BiocBaseUtils,BiocGenerics,httr2,jsonlite, methods,progress,rjsoncons,rlang, utils |
| System Requirements | |
| URL | https://github.com/Bioconductor/UniProt.ws |
| Bug Reports | https://github.com/Bioconductor/UniProt.ws/issues |
See More
| Suggests | BiocStyle,knitr,rmarkdown,tinytest |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | dagLogo,drugTargetInteractions,ginmappeR,immunogenViewer |
| Suggests Me | autonomics,cleaver,qPLEXanalyzer |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | UniProt.ws_2.50.0.tar.gz |
| Windows Binary (x86_64) | UniProt.ws_2.50.0.zip (64-bit only) |
| macOS Binary (x86_64) | UniProt.ws_2.50.0.tgz |
| macOS Binary (arm64) | UniProt.ws_2.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/UniProt.ws |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/UniProt.ws |
| Bioc Package Browser | https://code.bioconductor.org/browse/UniProt.ws/ |
| Package Short Url | https://bioconductor.org/packages/UniProt.ws/ |
| Package Downloads Report | Download Stats |