TransView
This package isdeprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.22 of Bioconductor.This package has been removed from Bioconductor.For the last stable, up-to-date release version, seeTransView.
Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets
Bioconductor version: Release (3.22)
This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.
Author: Julius Muller
Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>
citation("TransView")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("TransView")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | ChIPSeq,Clustering,DNAMethylation,DataImport,GeneExpression,ImmunoOncology,MethylSeq,Microarray,MultipleComparison,RNASeq,Sequencing,Software,Transcription,Visualization |
| Version | 1.53.1 |
| In Bioconductor since | BioC 2.11 (R-2.15) (13 years) |
| License | GPL-3 |
| Depends | methods,GenomicRanges |
| Imports | BiocGenerics,S4Vectors(>= 0.9.25),IRanges,gplots |
| System Requirements | GNU make |
| URL | http://bioconductor.org/packages/release/bioc/html/TransView.html |
See More
| Suggests | RUnit,pasillaBamSubset,BiocManager |
| Linking To | Rhtslib(>= 1.99.1) |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | TransView_1.53.1.zip |
| macOS Binary (x86_64) | TransView_1.54.0.tgz |
| macOS Binary (arm64) | TransView_1.54.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TransView |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TransView |
| Package Short Url | https://bioconductor.org/packages/TransView/ |
| Package Downloads Report | Download Stats |