| Depends On Me | AffiXcan,alabaster.se,AllelicImbalance,atena,bambu,batchCorr,betaHMM,BiocSklearn,BiSeq,bnbc,bsseq,CAGEfightR,celaref,clusterExperiment,CoreGx,coseq,csaw,CSSQ,DaMiRseq,deepSNV,DeMixT,DESeq2,DEXSeq,DiffBind,diffcoexp,diffHic,dinoR,divergence,DMCFB,DMCHMM,EnrichmentBrowser,evaluomeR,EventPointer,ExperimentSubset,ExpressionAtlas,extraChIPs,FEAST,FRASER,GenomicAlignments,GenomicFiles,GenomicSuperSignature,GRmetrics,GSEABenchmarkeR,HelloRanges,hermes,HERON,HiCDOC,InteractionSet,IntEREst,iSEE,iSEEhex,iSEEhub,iSEEindex,ISLET,ivygapSE,lefser,LimROTS,lipidr,LoomExperiment,made4,MatrixQCvis,MBASED,methodical,methrix,methylPipe,MetNet,MGnifyR,mia,miaViz,MICSQTL,minfi,moanin,mpra,MultiAssayExperiment,multistateQTL,NADfinder,NBAMSeq,NewWave,notame,notameViz,orthos,OUTRIDER,padma,PDATK,phenomis,PhIPData,PRONE,qmtools,qsvaR,QTLExperiment,recount,recount3,ReducedExperiment,RegEnrich,REMP,RFLOMICS,ROCpAI,rqt,runibic,Scale4C,scAnnotatR,scGPS,scone,screenCounter,scTreeViz,SDAMS,sechm,SeqGate,SEtools,SGSeq,signatureSearch,SingleCellExperiment,singleCellTK,SingleR,spillR,spqn,ssPATHS,stageR,survtype,TENxIO,tidyCoverage,tidySummarizedExperiment,TissueEnrich,TREG,UMI4Cats,VanillaICE,VariantAnnotation,VariantExperiment,velociraptor,weitrix,yamss,zinbwave,airway,BioPlex,bodymapRat,celldex,curatedAdipoChIP,curatedAdipoRNA,curatedMetagenomicData,fission,GSVAdata,HDCytoData,HighlyReplicatedRNASeq,HMP16SData,MetaGxPancreas,MethylSeqData,MicrobiomeBenchmarkData,microbiomeDataSets,microRNAome,MouseGastrulationData,MouseThymusAgeing,ObMiTi,sampleClassifierData,scMultiome,spatialDmelxsim,spqnData,timecoursedata,tuberculosis,TumourMethData,DRomics,OncoSubtype,ordinalbayes |
| Imports Me | ADAM,ADImpute,aggregateBioVar,airpart,alabaster.sfe,ALDEx2,anansi,anglemania,animalcules,anota2seq,apeglm,APL,appreci8R,ASICS,ASURAT,ATACseqTFEA,AUCell,autonomics,awst,Banksy,barbieQ,BASiCS,BASiCStan,batchelor,BatchQC,BatchSVG,BayesSpace,bayNorm,BBCAnalyzer,beer,BERT,bettr,BioGA,BioNERO,biosigner,biotmle,biovizBase,biscuiteer,BiSeq,blacksheepr,blase,BloodGen3Module,BreastSubtypeR,BulkSignalR,BUMHMM,BUScorrect,BUSseq,CaDrA,CAGEr,CalibraCurve,CARDspa,CATALYST,CatsCradle,cBioPortalData,ccfindR,ccImpute,CDI,celda,CelliD,CellMixS,CellTrails,censcyt,Cepo,CeTF,CHETAH,ChIPpeakAnno,ChromSCape,chromVAR,CiteFuse,CleanUpRNAseq,clustifyr,clustSIGNAL,cmapR,CNVfilteR,CNVRanger,CoGAPS,combi,concordexR,condiments,consensusDE,consICA,CopyNumberPlots,Coralysis,corral,countsimQC,CPSM,crupR,CSOA,CTexploreR,CTSV,CuratedAtlasQueryR,cydar,cypress,CyTOFpower,cytoKernel,cytomapper,cytoviewer,DAMEfinder,dandelionR,debrowser,decompTumor2Sig,decontX,DeconvoBuddies,DeeDeeExperiment,DEFormats,DEGreport,deltaCaptureC,demuxSNP,DEP,DEScan2,DESpace,destiny,DEWSeq,diffcyt,DifferentialRegulation,diffUTR,Dino,DiscoRhythm,distinct,dittoSeq,DMRcate,DNEA,DominoEffect,doppelgangR,doseR,dreamlet,DropletUtils,DspikeIn,Dune,easyRNASeq,eisaR,ELMER,epigraHMM,EpiMix,epimutacions,epiregulon,epiregulon.extra,epistack,epivizrData,escape,escheR,EWCE,fcScan,FeatSeekR,findIPs,FindIT2,fishpond,FLAMES,FuseSOM,G4SNVHunter,GARS,gCrisprTools,gDNAx,gDRcore,gDRimport,gDRutils,gemma.R,GeneTonic,genomicInstability,GEOquery,GeoTcgaData,getDEE2,geyser,ggbio,ggsc,ggspavis,Glimma,glmGamPoi,glmSparseNet,GRaNIE,GreyListChIP,gscreend,GSVA,gwasurvivr,GWENA,HarmonizR,HiContacts,HiCParser,HoloFoodR,hoodscanR,hummingbird,HybridExpress,iasva,Ibex,icetea,ideal,IFAA,IgGeneUsage,ILoReg,imcRtools,iModMix,infercnv,INSPEcT,iSEEde,iSEEfier,iSEEpathways,iSEEtree,iSEEu,IsoBayes,IsoformSwitchAnalyzeR,kmcut,LACE,lemur,limpca,lineagespot,lionessR,LipidTrend,lisaClust,looking4clusters,maaslin3,MAI,mariner,marr,MAST,mastR,mbkmeans,MBQN,mCSEA,MEAL,MEAT,MEB,MetaboAnnotation,MetaboDynamics,MetaNeighbor,metaseqR2,MethReg,MethylAid,methyLImp2,methylscaper,methylumi,miaDash,miaSim,miaTime,MicrobiotaProcess,midasHLA,miloR,MinimumDistance,miRSM,missMethyl,mist,MLInterfaces,MLSeq,mobileRNA,monaLisa,MoonlightR,mosdef,motifbreakR,motifmatchr,MotifPeeker,MPAC,MPRAnalyze,MsExperiment,MsFeatures,msgbsR,mspms,MSPrep,msqrob2,MuData,MultiDataSet,MultiRNAflow,multiWGCNA,mumosa,muscat,musicatk,mutscan,MWASTools,NanoMethViz,Nebulosa,NetActivity,netSmooth,nipalsMCIA,nnSVG,NormalyzerDE,oligoClasses,omicRexposome,omicsGMF,omicsPrint,omicsViewer,omXplore,oncomix,ontoProc,ORFik,OVESEG,PAIRADISE,pairedGSEA,pairkat,pcaExplorer,peco,PepSetTest,pgxRpi,PharmacoGx,phenopath,PhosR,pipeComp,Pirat,PIUMA,planttfhunter,plyxp,pmp,poem,PolySTest,POMA,POWSC,proActiv,proDA,psichomics,PureCN,QFeatures,qsmooth,quantiseqr,RadioGx,raer,RaggedExperiment,RareVariantVis,RcisTarget,ReactomeGSA,RegionalST,regionReport,regsplice,rgsepd,rifi,rifiComparative,Rmmquant,RNAAgeCalc,RNAsense,roar,RolDE,ropls,rScudo,RTCGAToolbox,RTN,RUCova,SanityR,saseR,satuRn,SBGNview,SC3,scafari,SCArray,SCArray.sat,scater,scBFA,scCB2,scDblFinder,scDD,scDDboost,scDesign3,scDiagnostics,scds,scGraphVerse,scHOT,scider,scmap,scMerge,scMET,scmeth,scMultiSim,SCnorm,scoreInvHap,scp,scPipe,scran,scReClassify,scRepertoire,scruff,scry,scTensor,scTGIF,scuttle,scviR,segmenter,seqCAT,SEraster,sesame,shinyDSP,sigFeature,signifinder,SigsPack,SimBu,simPIC,simpleSeg,SingleCellAlleleExperiment,singscore,slalom,slingshot,smartid,SmartPhos,smoothclust,snapcount,SNPhood,sosta,SpaceTrooper,spacexr,Spaniel,SpaNorm,spARI,spaSim,SpatialCPie,spatialDE,SpatialExperiment,spatialFDA,SpatialFeatureExperiment,spatialSimGP,SPIAT,spicyR,splatter,SpliceWiz,SplicingFactory,SplineDV,spoon,SpotClean,SpotSweeper,srnadiff,sSNAPPY,StabMap,standR,Statial,stJoincount,stPipe,StructuralVariantAnnotation,supersigs,SurfR,SVMDO,SVP,switchde,systemPipeR,systemPipeTools,TBSignatureProfiler,TCGAbiolinks,TCGAutils,TCseq,TENET,tenXplore,TFutils,tidybulk,tidySingleCellExperiment,tidySpatialExperiment,TOAST,tomoda,ToxicoGx,tpSVG,tradeSeq,TrajectoryUtils,transformGamPoi,transmogR,treeclimbR,TreeSummarizedExperiment,Trendy,tricycle,TSCAN,TTMap,TVTB,tximeta,UCell,UPDhmm,VAExprs,VariantFiltering,VDJdive,vidger,VisiumIO,visiumStitched,vmrseq,Voyager,wpm,XAItest,xCell2,xcms,XeniumIO,xenLite,zellkonverter,zFPKM,zitools,BloodCancerMultiOmics2017,brgedata,CLLmethylation,COSMIC.67,curatedTCGAData,DoReMiTra,easierData,emtdata,FieldEffectCrc,FlowSorted.Blood.EPIC,FlowSorted.CordBloodCombined.450k,GSE13015,HCATonsilData,HiBED,HMP2Data,homosapienDEE2CellScore,IHWpaper,LegATo,MerfishData,MetaGxBreast,MetaScope,orthosData,scRNAseq,SingleCellMultiModal,spatialLIBD,TabulaMurisSenisData,TCGAWorkflowData,TENET.ExperimentHub,TENxXeniumData,ExpHunterSuite,fluentGenomics,autoGO,DWLS,hicream,imcExperiment,karyotapR,MetAlyzer,microbial,mikropml,multimedia,PlasmaMutationDetector,RCPA,RNAseqQC,ROCnGO,scPipeline,scROSHI,treediff,VSOLassoBag |
| Suggests Me | alabaster.mae,AlpsNMR,ANCOMBC,anndataR,AnnotationHub,BindingSiteFinder,biobroom,BiocPkgTools,cageminer,CCAFE,COTAN,CTdata,dar,dcanr,dearseq,decoupleR,DelayedArray,DOtools,easier,edgeR,EnMCB,epialleleR,epivizr,epivizrChart,esetVis,fobitools,funOmics,gDR,GENIE3,GenomicRanges,globalSeq,gsean,HDF5Array,HVP,Informeasure,InteractiveComplexHeatmap,interactiveDisplay,iscream,knowYourCG,MatrixGenerics,mitology,MOFA2,MSnbase,pathMED,pathwayPCA,philr,podkat,PSMatch,RiboProfiling,Rvisdiff,S4Vectors,scFeatureFilter,scLANE,scrapper,semisup,SETA,sketchR,sparrow,SPOTlight,svaNUMT,svaRetro,systemPipeShiny,updateObject,biotmleData,curatedAdipoArray,curatedTBData,dorothea,DuoClustering2018,gDRtestData,GSE103322,multiWGCNAdata,pRolocdata,RforProteomics,SBGNview.data,tissueTreg,CAGEWorkflow,Canek,CimpleG,ClusterGVis,clustree,conos,CytoSimplex,dependentsimr,dyngen,file2meco,ggpicrust2,lfc,MiscMetabar,parafac4microbiome,polyRAD,RaceID,rliger,scStability,seqgendiff,Seurat,Signac,singleCellHaystack,speakeasyR,SuperCell,teal.slice,tidydr,volcano3D |
