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SQLDataFrame
This is thereleased version of SQLDataFrame; for the devel version, seeSQLDataFrame.
Representation of SQL tables in DataFrame metaphor
Bioconductor version: Release (3.22)
Implements bindings for SQL tables that are compatible with Bioconductor S4 data structures, namely the DataFrame and DelayedArray. This allows SQL-derived data to be easily used inside other Bioconductor objects (e.g., SummarizedExperiments) while keeping everything on disk.
Author: Qian Liu [aut, cre]
ORCID: 0000-0003-1456-5099, Aaron Lun [aut], Martin Morgan [aut]
Maintainer: Qian Liu <Qian.Liu at RoswellPark.org>
citation("SQLDataFrame")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("SQLDataFrame")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DataRepresentation,Infrastructure,Software |
| Version | 1.23.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (6 years) |
| License | LGPL (>= 3); File LICENSE |
| Depends | DelayedArray,S4Vectors |
| Imports | stats, utils, methods,BiocGenerics,RSQLite,duckdb,DBI |
| System Requirements | |
| URL | https://github.com/Bioconductor/SQLDataFrame |
| Bug Reports | https://github.com/Bioconductor/SQLDataFrame/issues |
See More
| Suggests | knitr,rmarkdown,BiocStyle,testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | SQLDataFrame_1.23.0.zip |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/SQLDataFrame |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SQLDataFrame |
| Bioc Package Browser | https://code.bioconductor.org/browse/SQLDataFrame/ |
| Package Short Url | https://bioconductor.org/packages/SQLDataFrame/ |
| Package Downloads Report | Download Stats |