RUVcorr
This is thereleased version of RUVcorr; for the devel version, seeRUVcorr.
Removal of unwanted variation for gene-gene correlations and related analysis
Bioconductor version: Release (3.22)
RUVcorr allows to apply global removal of unwanted variation (ridged version of RUV) to real and simulated gene expression data.
Author: Saskia Freytag
Maintainer: Saskia Freytag <saskia.freytag at perkins.uwa.edu.au>
Citation (from within R, enter
citation("RUVcorr")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("RUVcorr")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RUVcorr")| Vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression,Normalization,Software |
| Version | 1.42.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (10.5 years) |
| License | GPL-2 |
| Depends | |
| Imports | corrplot,MASS, stats,lattice, grDevices,gridExtra,snowfall,psych,BiocParallel, grid,bladderbatch,reshape2, graphics |
| System Requirements | |
| URL |
See More
| Suggests | knitr,hgu133a2.db,rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | RUVcorr_1.42.0.tar.gz |
| Windows Binary (x86_64) | RUVcorr_1.42.0.zip (64-bit only) |
| macOS Binary (x86_64) | RUVcorr_1.42.0.tgz |
| macOS Binary (arm64) | RUVcorr_1.42.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RUVcorr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RUVcorr |
| Bioc Package Browser | https://code.bioconductor.org/browse/RUVcorr/ |
| Package Short Url | https://bioconductor.org/packages/RUVcorr/ |
| Package Downloads Report | Download Stats |