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MsBackendMgf
This is thereleased version of MsBackendMgf; for the devel version, seeMsBackendMgf.
Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files
Bioconductor version: Release (3.22)
Mass spectrometry (MS) data backend supporting import and export of MS/MS spectra data from Mascot Generic Format (mgf) files. Objects defined in this package are supposed to be used with the Spectra Bioconductor package. This package thus adds mgf file support to the Spectra package.
Author: RforMassSpectrometry Package Maintainer [cre], Laurent Gatto [aut]
ORCID: 0000-0002-1520-2268, Johannes Rainer [aut] ORCID: 0000-0002-6977-7147, Sebastian Gibb [aut] ORCID: 0000-0001-7406-4443, Michael Witting [ctb] ORCID: 0000-0002-1462-4426, Adriano Rutz [ctb] ORCID: 0000-0003-0443-9902, Corey Broeckling [ctb] ORCID: 0000-0002-6158-827X
Maintainer: RforMassSpectrometry Package Maintainer <maintainer at rformassspectrometry.org>
citation("MsBackendMgf")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("MsBackendMgf")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MsBackendMgf")| Description and usage of MsBackendMgf | HTML | R Script |
| Reference Manual |
Details
| biocViews | DataImport,Infrastructure,MassSpectrometry,Metabolomics,Proteomics,Software |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (4.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0),Spectra(>= 1.5.14) |
| Imports | ProtGenerics(>= 1.35.3),BiocParallel,S4Vectors,IRanges,MsCoreUtils, methods, stats |
| System Requirements | |
| URL | https://github.com/RforMassSpectrometry/MsBackendMgf |
| Bug Reports | https://github.com/RforMassSpectrometry/MsBackendMgf/issues |
See More
| Suggests | testthat,knitr (>= 1.1.0),roxygen2,BiocStyle(>= 2.5.19),rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | CompoundDb,MsBackendRawFileReader,SpectriPy,xcms |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | MsBackendMgf_1.18.0.tar.gz |
| Windows Binary (x86_64) | MsBackendMgf_1.18.0.zip |
| macOS Binary (x86_64) | MsBackendMgf_1.18.0.tgz |
| macOS Binary (arm64) | MsBackendMgf_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MsBackendMgf |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MsBackendMgf |
| Bioc Package Browser | https://code.bioconductor.org/browse/MsBackendMgf/ |
| Package Short Url | https://bioconductor.org/packages/MsBackendMgf/ |
| Package Downloads Report | Download Stats |