MetaCyto
This is thereleased version of MetaCyto; for the devel version, seeMetaCyto.
MetaCyto: A package for meta-analysis of cytometry data
Bioconductor version: Release (3.22)
This package provides functions for preprocessing, automated gating and meta-analysis of cytometry data. It also provides functions that facilitate the collection of cytometry data from the ImmPort database.
Author: Zicheng Hu, Chethan Jujjavarapu, Sanchita Bhattacharya, Atul J. Butte
Maintainer: Zicheng Hu <zicheng.hu at ucsf.edu>
citation("MetaCyto")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("MetaCyto")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetaCyto")| Vignette Title | HTML | R Script |
| Reference Manual |
Details
| biocViews | CellBasedAssays,CellBiology,Clustering,FlowCytometry,ImmunoOncology,Preprocessing,Software,StatisticalMethod |
| Version | 1.32.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (8 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.4) |
| Imports | flowCore(>= 1.4),tidyr (>= 0.7),fastcluster,ggplot2,metafor,cluster,FlowSOM, grDevices, graphics, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | knitr,dplyr,rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | MetaCyto_1.32.0.tar.gz |
| Windows Binary (x86_64) | MetaCyto_1.32.0.zip |
| macOS Binary (x86_64) | MetaCyto_1.32.0.tgz |
| macOS Binary (arm64) | MetaCyto_1.32.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MetaCyto |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaCyto |
| Bioc Package Browser | https://code.bioconductor.org/browse/MetaCyto/ |
| Package Short Url | https://bioconductor.org/packages/MetaCyto/ |
| Package Downloads Report | Download Stats |