MOSim
This is thereleased version of MOSim; for the devel version, seeMOSim.
Multi-Omics Simulation (MOSim)
Bioconductor version: Release (3.22)
MOSim package simulates multi-omic experiments that mimic regulatory mechanisms within the cell, allowing flexible experimental design including time course and multiple groups.
Author: Carolina Monzó [aut], Carlos Martínez [aut], Sonia Tarazona [cre, aut]
Maintainer: Sonia Tarazona <sotacam at gmail.com>
Citation (from within R, enter
citation("MOSim")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("MOSim")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MOSim")| Wiki of how to use mosim | HTML | R Script |
| Wiki of how to use sc_mosim | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentalDesign,RNASeq,Software,TimeCourse |
| Version | 2.6.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (6 years) |
| License | GPL-3 |
| Depends | R (>= 4.2.0) |
| Imports | HiddenMarkov,zoo,IRanges,S4Vectors,dplyr,ggplot2,lazyeval,matrixStats, methods,rlang,stringi,stringr,scran,Seurat,Signac,edgeR,Rcpp |
| System Requirements | |
| URL | https://github.com/ConesaLab/MOSim |
| Bug Reports | https://github.com/ConesaLab/MOSim/issues |
See More
| Suggests | testthat,knitr,rmarkdown,codetools,BiocStyle, stats, utils,purrr,scales,tibble,tidyr,Biobase,scater,SingleCellExperiment,decor,markdown,Rsamtools,igraph,leiden,bluster |
| Linking To | cpp11,Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | MOSim_2.6.0.tar.gz |
| Windows Binary (x86_64) | MOSim_2.6.0.zip |
| macOS Binary (x86_64) | MOSim_2.6.0.tgz |
| macOS Binary (arm64) | MOSim_2.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MOSim |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MOSim |
| Bioc Package Browser | https://code.bioconductor.org/browse/MOSim/ |
| Package Short Url | https://bioconductor.org/packages/MOSim/ |
| Package Downloads Report | Download Stats |