- Home
- Bioconductor 3.22
- Software Packages
- GeneStructureTools
GeneStructureTools
This is thereleased version of GeneStructureTools; for the devel version, seeGeneStructureTools.
Tools for spliced gene structure manipulation and analysis
Bioconductor version: Release (3.22)
GeneStructureTools can be used to create in silico alternative splicing events, and analyse potential effects this has on functional gene products.
Author: Beth Signal
Maintainer: Beth Signal <b.signal at garvan.org.au>
Citation (from within R, enter
citation("GeneStructureTools")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("GeneStructureTools")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneStructureTools")| Introduction to GeneStructureTools | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | AlternativeSplicing,DifferentialSplicing,FunctionalPrediction,ImmunoOncology,RNASeq,Software,Transcriptomics |
| Version | 1.30.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (7.5 years) |
| License | BSD_3_clause + fileLICENSE |
| Depends | |
| Imports | Biostrings,GenomicRanges,IRanges,data.table,plyr,stringdist,stringr,S4Vectors,BSgenome.Mmusculus.UCSC.mm10, stats, utils,Gviz,rtracklayer, methods |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle,knitr,rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | GeneStructureTools_1.30.0.tar.gz |
| Windows Binary (x86_64) | GeneStructureTools_1.30.0.zip |
| macOS Binary (x86_64) | GeneStructureTools_1.30.0.tgz |
| macOS Binary (arm64) | GeneStructureTools_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GeneStructureTools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GeneStructureTools |
| Bioc Package Browser | https://code.bioconductor.org/browse/GeneStructureTools/ |
| Package Short Url | https://bioconductor.org/packages/GeneStructureTools/ |
| Package Downloads Report | Download Stats |