GenVisR
This is thereleased version of GenVisR; for the devel version, seeGenVisR.
Genomic Visualizations in R
Bioconductor version: Release (3.22)
Produce highly customizable publication quality graphics for genomic data primarily at the cohort level.
Author: Zachary Skidmore [aut, cre], Alex Wagner [aut], Robert Lesurf [aut], Katie Campbell [aut], Jason Kunisaki [aut], Obi Griffith [aut], Malachi Griffith [aut]
Maintainer: Zachary Skidmore <zlskidmore at gmail.com>
Citation (from within R, enter
citation("GenVisR")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("GenVisR")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Classification,DNASeq,DataRepresentation,Infrastructure,Software |
| Version | 1.41.2 |
| In Bioconductor since | BioC 3.3 (R-3.3) (9.5 years) |
| License | GPL-3 + file LICENSE |
| Depends | R (>= 3.3.0), methods |
| Imports | AnnotationDbi,biomaRt(>= 2.45.8),BiocGenerics,Biostrings,DBI,GenomicFeatures,GenomicRanges(>= 1.25.4),ggplot2 (>= 2.1.0),gridExtra (>= 2.0.0),gtable,gtools,IRanges(>= 2.7.5),plyr (>= 1.8.3),reshape2,Rsamtools,scales,viridis,data.table,BSgenome,Seqinfo,VariantAnnotation |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/griffithlab/GenVisR/issues |
See More
| Suggests | BiocStyle,BSgenome.Hsapiens.UCSC.hg19,knitr,RMySQL,roxygen2,testthat,TxDb.Hsapiens.UCSC.hg19.knownGene,rmarkdown,vdiffr,formatR,TxDb.Hsapiens.UCSC.hg38.knownGene,BSgenome.Hsapiens.UCSC.hg38 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | GenVisR_1.41.2.zip (64-bit only) |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/GenVisR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenVisR |
| Bioc Package Browser | https://code.bioconductor.org/browse/GenVisR/ |
| Package Short Url | https://bioconductor.org/packages/GenVisR/ |
| Package Downloads Report | Download Stats |