GSCA
This is thereleased version of GSCA; for the devel version, seeGSCA.
GSCA: Gene Set Context Analysis
Bioconductor version: Release (3.22)
GSCA takes as input several lists of activated and repressed genes. GSCA then searches through a compendium of publicly available gene expression profiles for biological contexts that are enriched with a specified pattern of gene expression. GSCA provides both traditional R functions and interactive, user-friendly user interface.
Author: Zhicheng Ji, Hongkai Ji
Maintainer: Zhicheng Ji <zji4 at jhu.edu>
citation("GSCA")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("GSCA")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSCA")| GSCA | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GUI,GeneExpression,Software,Visualization |
| Version | 2.40.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (11.5 years) |
| License | GPL(>=2) |
| Depends | shiny,sp,gplots,ggplot2,reshape2,RColorBrewer,rhdf5, R (>= 2.10.0) |
| Imports | graphics |
| System Requirements | |
| URL |
See More
| Suggests | Affyhgu133aExpr,Affymoe4302Expr,Affyhgu133A2Expr,Affyhgu133Plus2Expr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | GSCA_2.40.0.tar.gz |
| Windows Binary (x86_64) | GSCA_2.40.0.zip |
| macOS Binary (x86_64) | GSCA_2.40.0.tgz |
| macOS Binary (arm64) | GSCA_2.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GSCA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GSCA |
| Bioc Package Browser | https://code.bioconductor.org/browse/GSCA/ |
| Package Short Url | https://bioconductor.org/packages/GSCA/ |
| Package Downloads Report | Download Stats |