FitHiC
This is thereleased version of FitHiC; for the devel version, seeFitHiC.
Confidence estimation for intra-chromosomal contact maps
Bioconductor version: Release (3.22)
Fit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.
Author: Ferhat Ay [aut] (Python original, https://noble.gs.washington.edu/proj/fit-hi-c/), Timothy L. Bailey [aut], William S. Noble [aut], Ruyu Tan [aut, cre, trl] (R port)
Maintainer: Ruyu Tan <rut003 at ucsd.edu>
citation("FitHiC")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("FitHiC")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FitHiC")| Vignette Title | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DNA3DStructure,Software |
| Version | 1.36.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (9 years) |
| License | GPL (>= 2) |
| Depends | |
| Imports | data.table,fdrtool, grDevices, graphics,Rcpp, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | knitr,rmarkdown |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | FitHiC_1.36.0.tar.gz |
| Windows Binary (x86_64) | FitHiC_1.36.0.zip (64-bit only) |
| macOS Binary (x86_64) | FitHiC_1.36.0.tgz |
| macOS Binary (arm64) | FitHiC_1.36.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/FitHiC |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/FitHiC |
| Bioc Package Browser | https://code.bioconductor.org/browse/FitHiC/ |
| Package Short Url | https://bioconductor.org/packages/FitHiC/ |
| Package Downloads Report | Download Stats |