FGNet
This is thereleased version of FGNet; for the devel version, seeFGNet.
Functional Gene Networks derived from biological enrichment analyses
Bioconductor version: Release (3.22)
Build and visualize functional gene and term networks from clustering of enrichment analyses in multiple annotation spaces. The package includes a graphical user interface (GUI) and functions to perform the functional enrichment analysis through DAVID, GeneTerm Linker, gage (GSEA) and topGO.
Author: Sara Aibar, Celia Fontanillo, Conrad Droste and Javier De Las Rivas.
Maintainer: Sara Aibar <saibar at usal.es>
citation("FGNet")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("FGNet")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FGNet")| FGNet | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation,Clustering,FunctionalGenomics,GO,GeneSetEnrichment,Network,NetworkEnrichment,Pathways,Software,Visualization |
| Version | 3.44.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (12 years) |
| License | GPL (>= 2) |
| Depends | R (>= 4.2.0) |
| Imports | igraph (>= 0.6),hwriter,R.utils,XML,plotrix,reshape2,RColorBrewer,png, methods, stats, utils, graphics, grDevices |
| System Requirements | |
| URL | http://www.cicancer.org |
See More
| Suggests | RCurl,gage,topGO,GO.db,reactome.db,RUnit,BiocGenerics,org.Sc.sgd.db,knitr,rmarkdown,AnnotationDbi,BiocManager |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | IntramiRExploreR |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | FGNet_3.44.0.tar.gz |
| Windows Binary (x86_64) | FGNet_3.44.0.zip |
| macOS Binary (x86_64) | FGNet_3.44.0.tgz |
| macOS Binary (arm64) | FGNet_3.44.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/FGNet |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/FGNet |
| Bioc Package Browser | https://code.bioconductor.org/browse/FGNet/ |
| Package Short Url | https://bioconductor.org/packages/FGNet/ |
| Package Downloads Report | Download Stats |