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EnrichedHeatmap
This is thereleased version of EnrichedHeatmap; for the devel version, seeEnrichedHeatmap.
Making Enriched Heatmaps
Bioconductor version: Release (3.22)
Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.
Author: Zuguang Gu [aut, cre]
ORCID: 0000-0002-7395-8709
Maintainer: Zuguang Gu <z.gu at dkfz.de>
citation("EnrichedHeatmap")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("EnrichedHeatmap")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EnrichedHeatmap")| 1. Make Enriched Heatmaps | HTML | R Script |
| 2. Visualize Categorical Signals | HTML | R Script |
| 3. Compare row ordering methods | HTML | R Script |
| 4. Visualize Comprehensive Associations in Roadmap dataset | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Coverage,GenomeAnnotation,Sequencing,Software,Visualization |
| Version | 1.40.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (10 years) |
| License | MIT + fileLICENSE |
| Depends | R (>= 3.6.0), methods, grid,ComplexHeatmap(>= 2.11.0),GenomicRanges |
| Imports | matrixStats, stats,GetoptLong,Rcpp, utils,locfit,circlize (>= 0.4.5),IRanges |
| System Requirements | |
| URL | https://github.com/jokergoo/EnrichedHeatmap |
See More
| Suggests | testthat (>= 0.3),knitr,markdown,rmarkdown,genefilter,RColorBrewer |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | ComplexHeatmap,epistack,extraChIPs,InteractiveComplexHeatmap |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | EnrichedHeatmap_1.40.0.tar.gz |
| Windows Binary (x86_64) | EnrichedHeatmap_1.40.0.zip |
| macOS Binary (x86_64) | EnrichedHeatmap_1.40.0.tgz |
| macOS Binary (arm64) | EnrichedHeatmap_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/EnrichedHeatmap |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/EnrichedHeatmap |
| Bioc Package Browser | https://code.bioconductor.org/browse/EnrichedHeatmap/ |
| Package Short Url | https://bioconductor.org/packages/EnrichedHeatmap/ |
| Package Downloads Report | Download Stats |