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DelayedMatrixStats
This is thereleased version of DelayedMatrixStats; for the devel version, seeDelayedMatrixStats.
Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects
Bioconductor version: Release (3.22)
A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.
Author: Peter Hickey [aut, cre]
ORCID: 0000-0002-8153-6258, Hervé Pagès [ctb], Aaron Lun [ctb]
Maintainer: Peter Hickey <peter.hickey at gmail.com>
citation("DelayedMatrixStats")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("DelayedMatrixStats")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DelayedMatrixStats")| Overview of DelayedMatrixStats | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataRepresentation,Infrastructure,Software |
| Version | 1.32.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (8 years) |
| License | MIT + fileLICENSE |
| Depends | MatrixGenerics(>= 1.15.1),DelayedArray(>= 0.31.7) |
| Imports | methods,sparseMatrixStats(>= 1.13.2),Matrix (>= 1.5-0),S4Vectors(>= 0.17.5),IRanges(>= 2.25.10),SparseArray(>= 1.5.19) |
| System Requirements | |
| URL | https://github.com/PeteHaitch/DelayedMatrixStats |
| Bug Reports | https://github.com/PeteHaitch/DelayedMatrixStats/issues |
See More
| Suggests | testthat,knitr,rmarkdown,BiocStyle,microbenchmark,profmem,HDF5Array,matrixStats (>= 1.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | AUCell,batchelor,biscuiteer,bsseq,Cepo,DeconvoBuddies,dmrseq,dreamlet,DropletUtils,FRASER,glmGamPoi,GSVA,lemur,methrix,methylSig,mia,minfi,mumosa,NetActivity,recountmethylation,SCArray,scMerge,scone,singleCellTK,SingleR,sparrow,SpliceWiz,SVP,weitrix,celldex,spatialGE |
| Suggests Me | blase,condiments,dandelionR,DelayedArray,escape,EWCE,HDF5Array,MatrixGenerics,mbkmeans,ScaledMatrix,scater,scPCA,scran,scuttle,slingshot,SplineDV,tradeSeq,TrajectoryUtils,Voyager,ClustAssess |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | DelayedMatrixStats_1.32.0.tar.gz |
| Windows Binary (x86_64) | DelayedMatrixStats_1.32.0.zip |
| macOS Binary (x86_64) | DelayedMatrixStats_1.32.0.tgz |
| macOS Binary (arm64) | DelayedMatrixStats_1.32.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DelayedMatrixStats |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DelayedMatrixStats |
| Bioc Package Browser | https://code.bioconductor.org/browse/DelayedMatrixStats/ |
| Package Short Url | https://bioconductor.org/packages/DelayedMatrixStats/ |
| Package Downloads Report | Download Stats |