DNAcopy
This is thereleased version of DNAcopy; for the devel version, seeDNAcopy.
DNA Copy Number Data Analysis
Bioconductor version: Release (3.22)
Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.
Author: Venkatraman E. Seshan, Adam Olshen
Maintainer: Venkatraman E. Seshan <seshanv at mskcc.org>
Citation (from within R, enter
citation("DNAcopy")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("DNAcopy")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DNAcopy")| DNAcopy | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CopyNumberVariation,Microarray,Software |
| Version | 1.84.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 20.5 years) |
| License | GPL (>= 2) |
| Depends | |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | CGHcall,cghMCR,CRImage,PureCN,CSclone,ParDNAcopy,saasCNV |
| Imports Me | ADaCGH2,ChAMP,cn.farms,CNAnorm,CNVrd2,conumee,GWASTools,maftools,MDTS,MEDIPS,MinimumDistance,QDNAseq,SCOPE,jointseg,PSCBS |
| Suggests Me | cn.mops,CopyNumberPlots,fastseg,nullranges,sesame,ACNE,aroma.cn,aroma.core,calmate |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | DNAcopy_1.84.0.tar.gz |
| Windows Binary (x86_64) | DNAcopy_1.84.0.zip |
| macOS Binary (x86_64) | DNAcopy_1.84.0.tgz |
| macOS Binary (arm64) | DNAcopy_1.84.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DNAcopy |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DNAcopy |
| Bioc Package Browser | https://code.bioconductor.org/browse/DNAcopy/ |
| Package Short Url | https://bioconductor.org/packages/DNAcopy/ |
| Package Downloads Report | Download Stats |