DEScan2
This is thereleased version of DEScan2; for the devel version, seeDEScan2.
Differential Enrichment Scan 2
Bioconductor version: Release (3.22)
Integrated peak and differential caller, specifically designed for broad epigenomic signals.
Author: Dario Righelli [aut, cre], John Koberstein [aut], Bruce Gomes [aut], Nancy Zhang [aut], Claudia Angelini [aut], Lucia Peixoto [aut], Davide Risso [aut]
Maintainer: Dario Righelli <dario.righelli at gmail.com>
Citation (from within R, enter
citation("DEScan2")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("DEScan2")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DEScan2")| DEScan2 Vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Coverage,Epigenetics,ImmunoOncology,PeakDetection,Sequencing,Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (7.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5),GenomicRanges |
| Imports | BiocParallel,BiocGenerics,ChIPpeakAnno,data.table,DelayedArray,Seqinfo,GenomeInfoDb,GenomicAlignments,glue,IRanges,plyr,Rcpp (>= 0.12.13),rtracklayer,S4Vectors(>= 0.23.19),SummarizedExperiment, tools, utils |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle,knitr,rmarkdown,testthat,edgeR,limma,EDASeq,RUVSeq,RColorBrewer,statmod |
| Linking To | Rcpp,RcppArmadillo |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | DEScan2_1.30.0.tar.gz |
| Windows Binary (x86_64) | DEScan2_1.30.0.zip |
| macOS Binary (x86_64) | DEScan2_1.30.0.tgz |
| macOS Binary (arm64) | DEScan2_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DEScan2 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DEScan2 |
| Bioc Package Browser | https://code.bioconductor.org/browse/DEScan2/ |
| Package Short Url | https://bioconductor.org/packages/DEScan2/ |
| Package Downloads Report | Download Stats |