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ComplexHeatmap

This is thereleased version of ComplexHeatmap; for the devel version, seeComplexHeatmap.

Make Complex Heatmaps

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DOI: 10.18129/B9.bioc.ComplexHeatmap


Bioconductor version: Release (3.22)

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

Author: Zuguang Gu [aut, cre]ORCID iD ORCID: 0000-0002-7395-8709

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, entercitation("ComplexHeatmap")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("ComplexHeatmap")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ComplexHeatmap")
complex_heatmap.htmlHTML
Most probably asked questionsHTMLR Script
Reference ManualPDF
NEWSText
LICENSEText

Need some help? Ask on the Bioconductor Support site!

Details

biocViewsSequencing,Software,Visualization
Version2.26.0
In Bioconductor sinceBioC 3.1 (R-3.2) (10.5 years)
LicenseMIT + fileLICENSE
DependsR (>= 4.0.0), methods, grid, graphics, stats, grDevices
Importscirclize (>= 0.4.14),GetoptLong,colorspace,clue,RColorBrewer,GlobalOptions (>= 0.1.0),png,digest,IRanges,matrixStats,foreach,doParallel,codetools
System Requirements
URLhttps://github.com/jokergoo/ComplexHeatmaphttps://jokergoo.github.io/ComplexHeatmap-reference/book/
See More
Suggeststestthat (>= 1.0.0),knitr,markdown,dendsort,jpeg,tiff,fastcluster,EnrichedHeatmap,dendextend (>= 1.0.1),grImport,grImport2,glue,GenomicRanges,gridtext,pheatmap (>= 1.0.12),gridGraphics,gplots,rmarkdown,Cairo,magick
Linking To
Enhances
Depends On MeAMARETTO,EnrichedHeatmap,InteractiveComplexHeatmap,multistateQTL,recoup,sechm,countToFPKM
Imports Meairpart,ASURAT,barbieQ,bettr,BindingSiteFinder,BioNERO,blacksheepr,BloodGen3Module,BreastSubtypeR,BulkSignalR,CATALYST,CCPlotR,celda,CeTF,chevreulPlot,chevreulShiny,ClustAll,COCOA,cola,COTAN,CTexploreR,cytoKernel,Damsel,dar,DEGreport,DEP,diffcyt,diffUTR,dinoR,dominoSignal,ELMER,ELViS,epiregulon.extra,fCCAC,FLAMES,gCrisprTools,GeDi,GeneTonic,GenomicPlot,GenomicSuperSignature,geyser,gmoviz,GRaNIE,gVenn,hermes,hoodscanR,HybridExpress,iModMix,InterCellar,iSEE,MAPFX,markeR,MatrixQCvis,MesKit,mitology,MOMA,monaLisa,Moonlight2R,MOSClip,MPAC,MultiRNAflow,muscat,musicatk,MWASTools,nipalsMCIA,pathlinkR,PathoStat,PeacoQC,pipeComp,POMA,PRONE,RFLOMICS,RiboCrypt,RUCova,scafari,scRNAseqApp,segmenter,shinyDSP,signifinder,simona,simplifyEnrichment,singleCellTK,sparrow,SPONGE,TBSignatureProfiler,TMSig,ViSEAGO,Xeva,YAPSA,spatialLIBD,autoGO,bulkAnalyseR,cellGeometry,coda4microbiome,conos,DeSciDe,DiscreteGapStatistic,GAPR,GSSTDA,karyotapR,mineSweepR,missoNet,MitoHEAR,MKomics,ogrdbstats,Path.Analysis,PCAPAM50,pkgndep,RepeatedHighDim,rKOMICS,RNAseqQC,scITD,SeuratExplorer,sigQC,SingleCellComplexHeatMap,spatialGE,spiralize,tidyHeatmap,TransProR,visxhclust,wilson
Suggests MeartMS,bambu,clustifyr,CNVRanger,Coralysis,demuxSNP,dittoSeq,EnrichmentBrowser,gtrellis,HilbertCurve,mastR,miaViz,msImpute,plotgardener,projectR,QFeatures,raer,scDblFinder,scDiagnostics,scLANE,SpaceMarkers,SPIAT,TCGAbiolinks,TCGAutils,weitrix,curatedPCaData,LegATo,NanoporeRNASeq,ProteinGymR,BeeBDC,CIARA,circlize,circlizePlus,ClustAssess,ClusterGVis,ConsensusOPLS,eclust,ggpicrust2,ggsector,grandR,inferCSN,metasnf,multipanelfigure,plotthis,rliger,scCustomize,SCpubr,sfcurve,singleCellHaystack,tinyarray
Links To Me
Build ReportBuild Report

Package Archives

FollowInstallation instructions to use this package in your R session.

Source PackageComplexHeatmap_2.26.0.tar.gz
Windows Binary (x86_64) ComplexHeatmap_2.26.0.zip
macOS Binary (x86_64)ComplexHeatmap_2.26.0.tgz
macOS Binary (arm64)ComplexHeatmap_2.26.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/ComplexHeatmap
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/ComplexHeatmap
Bioc Package Browserhttps://code.bioconductor.org/browse/ComplexHeatmap/
Package Short Urlhttps://bioconductor.org/packages/ComplexHeatmap/
Package Downloads ReportDownload Stats
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