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ChromSCape
This is thereleased version of ChromSCape; for the devel version, seeChromSCape.
Analysis of single-cell epigenomics datasets with a Shiny App
Bioconductor version: Release (3.22)
ChromSCape - Chromatin landscape profiling for Single Cells - is a ready-to-launch user-friendly Shiny Application for the analysis of single-cell epigenomics datasets (scChIP-seq, scATAC-seq, scCUT&Tag, ...) from aligned data to differential analysis & gene set enrichment analysis. It is highly interactive, enables users to save their analysis and covers a wide range of analytical steps: QC, preprocessing, filtering, batch correction, dimensionality reduction, vizualisation, clustering, differential analysis and gene set analysis.
Author: Pacome Prompsy [aut, cre]
ORCID: 0000-0003-4375-7583, Celine Vallot [aut] ORCID: 0000-0003-1601-2359
Maintainer: Pacome Prompsy <pacome.pr at gmail.com>
citation("ChromSCape")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("ChromSCape")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChromSCape")| ChromSCape | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
See More
| Suggests | testthat,knitr,markdown,rmarkdown,BiocStyle,Signac,future,igraph,bluster,httr |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | ChromSCape_1.20.0.tar.gz |
| Windows Binary (x86_64) | ChromSCape_1.20.0.zip |
| macOS Binary (x86_64) | ChromSCape_1.20.0.tgz |
| macOS Binary (arm64) | ChromSCape_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ChromSCape |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ChromSCape |
| Bioc Package Browser | https://code.bioconductor.org/browse/ChromSCape/ |
| Package Short Url | https://bioconductor.org/packages/ChromSCape/ |
| Package Downloads Report | Download Stats |