ChIPseqR
This is thereleased version of ChIPseqR; for the devel version, seeChIPseqR.
Identifying Protein Binding Sites in High-Throughput Sequencing Data
Bioconductor version: Release (3.22)
ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.
Author: Peter Humburg
Maintainer: Peter Humburg <peter.humburg at gmail.com>
Citation (from within R, enter
citation("ChIPseqR")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("ChIPseqR")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChIPseqR")| Introduction to ChIPseqR | R Script | |
| Reference Manual |
Details
| biocViews | ChIPSeq,Infrastructure,Software |
| Version | 1.64.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (16 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10.0), methods,BiocGenerics,S4Vectors(>= 0.9.25) |
| Imports | Biostrings,fBasics,GenomicRanges,IRanges(>= 2.5.14), graphics, grDevices,HilbertVis,ShortRead, stats,timsac, utils |
| System Requirements | |
| URL |
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| Depends On Me | |
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| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | ChIPseqR_1.64.0.tar.gz |
| Windows Binary (x86_64) | ChIPseqR_1.64.0.zip |
| macOS Binary (x86_64) | ChIPseqR_1.64.0.tgz |
| macOS Binary (arm64) | ChIPseqR_1.64.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ChIPseqR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ChIPseqR |
| Bioc Package Browser | https://code.bioconductor.org/browse/ChIPseqR/ |
| Package Short Url | https://bioconductor.org/packages/ChIPseqR/ |
| Package Downloads Report | Download Stats |