ChIPQC
This is thereleased version of ChIPQC; for the devel version, seeChIPQC.
Quality metrics for ChIPseq data
Bioconductor version: Release (3.22)
Quality metrics for ChIPseq data.
Author: Tom Carroll, Wei Liu, Ines de Santiago, Rory Stark
Maintainer: Tom Carroll <tc.infomatics at gmail.com>, Rory Stark <bioconductor at starkhome.com>
Citation (from within R, enter
citation("ChIPQC")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("ChIPQC")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | ChIPSeq,QualityControl,ReportWriting,Sequencing,Software |
| Version | 1.45.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (11.5 years) |
| License | GPL (>= 3) |
| Depends | R (>= 3.5.0),ggplot2,DiffBind,GenomicRanges(>= 1.17.19),BiocParallel |
| Imports | BiocGenerics(>= 0.11.3),S4Vectors(>= 0.1.0),IRanges(>= 1.99.17),Rsamtools(>= 1.17.28),GenomicAlignments(>= 1.1.16),chipseq(>= 1.12.0),gtools, methods,reshape2, Nozzle.R1,Biobase, grDevices, stats, utils,GenomicFeatures,TxDb.Hsapiens.UCSC.hg19.knownGene,TxDb.Hsapiens.UCSC.hg18.knownGene,TxDb.Mmusculus.UCSC.mm10.knownGene,TxDb.Mmusculus.UCSC.mm9.knownGene,TxDb.Rnorvegicus.UCSC.rn4.ensGene,TxDb.Celegans.UCSC.ce6.ensGene,TxDb.Dmelanogaster.UCSC.dm3.ensGene |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | ChIPQC_1.45.0.zip (64-bit only) |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ChIPQC |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ChIPQC |
| Bioc Package Browser | https://code.bioconductor.org/browse/ChIPQC/ |
| Package Short Url | https://bioconductor.org/packages/ChIPQC/ |
| Package Downloads Report | Download Stats |