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BubbleTree
This is thereleased version of BubbleTree; for the devel version, seeBubbleTree.
BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data
Bioconductor version: Release (3.22)
CNV analysis in groups of tumor samples.
Author: Wei Zhu <zhuw at medimmune.com>, Michael Kuziora <kuzioram at medimmune.com>, Todd Creasy <creasyt at medimmune.com>, Brandon Higgs <higgsb at medimmune.com>
Maintainer: Todd Creasy <creasyt at medimmune.com>, Wei Zhu <weizhu365 at gmail.com>
Citation (from within R, enter
citation("BubbleTree")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("BubbleTree")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | CopyNumberVariation,Coverage,Sequencing,Software |
| Version | 2.39.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (10.5 years) |
| License | LGPL (>= 3) |
| Depends | R (>= 3.5),IRanges,GenomicRanges,plyr,dplyr,magrittr |
| Imports | BiocGenerics(>= 0.31.6),BiocStyle,Biobase,ggplot2,WriteXLS,gtools,RColorBrewer,limma, grid,gtable,gridExtra,biovizBase,e1071, methods, grDevices, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | knitr,rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | BubbleTree_2.39.0.zip |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/BubbleTree |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BubbleTree |
| Bioc Package Browser | https://code.bioconductor.org/browse/BubbleTree/ |
| Package Short Url | https://bioconductor.org/packages/BubbleTree/ |
| Package Downloads Report | Download Stats |