This page was generated on 2025-12-15 12:05 -0500 (Mon, 15 Dec 2025).
CHECK results for scTHI on nebbiolo2
To the developers/maintainers of the scTHI package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scTHI.git to reflect on this report. SeeTroubleshooting Build Report for more information. - Use the followingRenviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. SeeRenviron.bioc for more information.
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raw results
Summary
| Package: scTHI |
| Version: 1.22.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:scTHI.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings scTHI_1.22.0.tar.gz |
| StartedAt: 2025-12-12 04:43:59 -0500 (Fri, 12 Dec 2025) |
| EndedAt: 2025-12-12 04:45:50 -0500 (Fri, 12 Dec 2025) |
| EllapsedTime: 111.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: scTHI.Rcheck |
| Warnings: 0 |
Command output
################################################################################################################################################################## Running command:###### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:scTHI.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings scTHI_1.22.0.tar.gz###############################################################################################################################################################* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/scTHI.Rcheck’* using R version 4.5.2 (2025-10-31)* using platform: x86_64-pc-linux-gnu* R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0* running under: Ubuntu 24.04.3 LTS* using session charset: UTF-8* checking for file ‘scTHI/DESCRIPTION’ ... OK* this is package ‘scTHI’ version ‘1.22.0’* package encoding: UTF-8* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘scTHI’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking loading without being on the library search path ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... OK* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking R/sysdata.rda ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OKExamples with CPU (user + system) or elapsed time > 5s user system elapsedTME_plot 1.472 0.053 5.134* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking re-building of vignette outputs ... OK* checking PDF version of manual ... OK* DONEStatus: OK
Installation output
scTHI.Rcheck/00install.out
################################################################################################################################################################## Running command:###### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL scTHI###############################################################################################################################################################* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’* installing *source* package ‘scTHI’ ...** this is package ‘scTHI’ version ‘1.22.0’** using staged installation** R** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (scTHI)
Tests output
Example timings
scTHI.Rcheck/scTHI-Ex.timings
| name | user | system | elapsed |
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| TME_classification | 0.392 | 0.023 | 0.417 | |
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| TME_plot | 1.472 | 0.053 | 5.134 | |
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| scTHI_plotCluster | 1.052 | 0.019 | 4.730 | |
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| scTHI_plotPairs | 1.025 | 0.023 | 4.893 | |
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| scTHI_plotResult | 0.458 | 0.012 | 4.348 | |
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| scTHI_runTsne | 1.188 | 0.015 | 4.811 | |
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| scTHI_score | 0.525 | 0.020 | 4.230 | |
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