Movatterモバイル変換


[0]ホーム

URL:


Back toMultiple platform build/check report for BioC 3.22:   simplified   long
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

This page was generated on 2025-12-15 12:08 -0500 (Mon, 15 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble"4882
merida1macOS 12.7.6 Montereyx86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble"4673
kjohnson1macOS 13.7.5 Venturaarm644.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble"4607
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six"4671
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package1782/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rgoslin 1.14.0  (landing page)
Nils Hoffmann
Snapshot Date: 2025-12-11 13:45 -0500 (Thu, 11 Dec 2025)
git_url: https://git.bioconductor.org/packages/rgoslin
git_branch: RELEASE_3_22
git_last_commit: 484ceb7
git_last_commit_date: 2025-10-29 11:15:32 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.7.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


BUILD BIN results for rgoslin on kjohnson1

To the developers/maintainers of the rgoslin package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rgoslin.git to reflect on this report. SeeTroubleshooting Build Report for more information.
- Use the followingRenviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. SeeRenviron.bioc for more information.

raw results


Summary

Package: rgoslin
Version: 1.14.0
Command: rm -rf rgoslin.buildbin-libdir && mkdir rgoslin.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh rgoslin_1.14.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R rgoslin.buildbin-libdir
StartedAt: 2025-12-14 11:53:44 -0500 (Sun, 14 Dec 2025)
EndedAt: 2025-12-14 11:58:37 -0500 (Sun, 14 Dec 2025)
EllapsedTime: 292.6 seconds
RetCode: 0
Status:  OK  
PackageFile: rgoslin_1.14.0.tgz
PackageFileSize: 1.138MiB

Command output

################################################################################################################################################################## Running command:######   rm -rf rgoslin.buildbin-libdir && mkdir rgoslin.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh rgoslin_1.14.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R rgoslin.buildbin-libdir###############################################################################################################################################################>>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=rgoslin.buildbin-libdir rgoslin_1.14.0.tar.gz'>>>>>>> * installing *source* package ‘rgoslin’ ...** this is package ‘rgoslin’ version ‘1.14.0’** using staged installation** libsusing C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’using C++11using SDK: ‘MacOSX11.3.1.sdk’The name of the shared library to be created is: rgoslin.soThe name of the shared library to be created is: rgoslin.sorm -f "cppgoslin/parser/KnownGrammars.h"rm -f "src/domain/LipidClasses.cpp"rm -f "cppgoslin/domain/ClassesEnum.h"rm -f cppgoslin/domain/*.orm -f cppgoslin/parser/*.orm -f cppgoslin/tests/*.orm -f libcppGoslin.sorm -f *Testrm -f writeGrammarsHeaderrm -f writeLipidEnumsrm -f libcppGoslin.aclang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I . -o writeGrammarsHeader writeGrammarsHeader.cpp && "./writeGrammarsHeader" "cppgoslin/parser/KnownGrammars.h"clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I . -o writeLipidEnums writeLipidEnums.cpp src/domain/StringFunctions.cpp src/parser/SumFormulaParserEventHandler.cpp src/parser/ParserClasses.cpp && "./writeLipidEnums" "src/domain/LipidClasses.cpp"clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/Adduct.o -c src/domain/Adduct.cppclang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidMolecularSpecies.o -c src/domain/LipidMolecularSpecies.cppIn file included from src/domain/LipidMolecularSpecies.cpp:26:In file included from ./cppgoslin/domain/LipidMolecularSpecies.h:32:In file included from ./cppgoslin/domain/LipidSpecies.h:36:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidSnPosition.o -c src/domain/LipidSnPosition.cppIn file included from src/domain/LipidSnPosition.cpp:26:In file included from ./cppgoslin/domain/LipidSnPosition.h:32:In file included from ./cppgoslin/domain/Headgroup.h:31:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidStructureDefined.o -c src/domain/LipidStructureDefined.cppIn file included from src/domain/LipidStructureDefined.cpp:26:In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:In file included from ./cppgoslin/domain/Headgroup.h:31:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/FattyAcid.o -c src/domain/FattyAcid.cppclang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidAdduct.o -c src/domain/LipidAdduct.cppIn file included from src/domain/LipidAdduct.cpp:26:In file included from ./cppgoslin/domain/LipidAdduct.h:35:In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:In file included from ./cppgoslin/domain/LipidFullStructure.h:31:In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:In file included from ./cppgoslin/domain/Headgroup.h:31:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidSpecies.o -c src/domain/LipidSpecies.cppIn file included from src/domain/LipidSpecies.cpp:26:In file included from ./cppgoslin/domain/LipidSpecies.h:36:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidFullStructure.o -c src/domain/LipidFullStructure.cppIn file included from src/domain/LipidFullStructure.cpp:26:In file included from ./cppgoslin/domain/LipidFullStructure.h:31:In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:In file included from ./cppgoslin/domain/Headgroup.h:31:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidCompleteStructure.o -c src/domain/LipidCompleteStructure.cppIn file included from src/domain/LipidCompleteStructure.cpp:26:In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:In file included from ./cppgoslin/domain/LipidFullStructure.h:31:In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:In file included from ./cppgoslin/domain/Headgroup.h:31:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidSpeciesInfo.o -c src/domain/LipidSpeciesInfo.cppIn file included from src/domain/LipidSpeciesInfo.cpp:26:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/StringFunctions.o -c src/domain/StringFunctions.cppclang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/LipidClasses.o -c src/domain/LipidClasses.cppclang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/DoubleBonds.o -c src/domain/DoubleBonds.cppclang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/FunctionalGroup.o -c src/domain/FunctionalGroup.cppclang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/Headgroup.o -c src/domain/Headgroup.cppIn file included from src/domain/Headgroup.cpp:26:In file included from ./cppgoslin/domain/Headgroup.h:31:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/Cycle.o -c src/domain/Cycle.cppclang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/domain/GenericDatastructures.o -c src/domain/GenericDatastructures.cppclang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/ParserClasses.o -c src/parser/ParserClasses.cppclang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/KnownParsers.o -c src/parser/KnownParsers.cppIn file included from src/parser/KnownParsers.cpp:26:In file included from ./cppgoslin/parser/KnownParsers.h:30:In file included from ./cppgoslin/parser/FattyAcidParserEventHandler.h:31:In file included from ./cppgoslin/domain/LipidAdduct.h:35:In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:In file included from ./cppgoslin/domain/LipidFullStructure.h:31:In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:In file included from ./cppgoslin/domain/Headgroup.h:31:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/GoslinParserEventHandler.o -c src/parser/GoslinParserEventHandler.cppIn file included from src/parser/GoslinParserEventHandler.cpp:26:In file included from ./cppgoslin/parser/GoslinParserEventHandler.h:31:In file included from ./cppgoslin/domain/LipidAdduct.h:35:In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:In file included from ./cppgoslin/domain/LipidFullStructure.h:31:In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:In file included from ./cppgoslin/domain/Headgroup.h:31:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/LipidMapsParserEventHandler.o -c src/parser/LipidMapsParserEventHandler.cppIn file included from src/parser/LipidMapsParserEventHandler.cpp:26:In file included from ./cppgoslin/parser/LipidMapsParserEventHandler.h:31:In file included from ./cppgoslin/domain/LipidAdduct.h:35:In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:In file included from ./cppgoslin/domain/LipidFullStructure.h:31:In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:In file included from ./cppgoslin/domain/Headgroup.h:31:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/SwissLipidsParserEventHandler.o -c src/parser/SwissLipidsParserEventHandler.cppIn file included from src/parser/SwissLipidsParserEventHandler.cpp:26:In file included from ./cppgoslin/parser/SwissLipidsParserEventHandler.h:32:In file included from ./cppgoslin/domain/LipidAdduct.h:35:In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:In file included from ./cppgoslin/domain/LipidFullStructure.h:31:In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:In file included from ./cppgoslin/domain/Headgroup.h:31:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/HmdbParserEventHandler.o -c src/parser/HmdbParserEventHandler.cppIn file included from src/parser/HmdbParserEventHandler.cpp:26:In file included from ./cppgoslin/parser/HmdbParserEventHandler.h:31:In file included from ./cppgoslin/domain/LipidAdduct.h:35:In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:In file included from ./cppgoslin/domain/LipidFullStructure.h:31:In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:In file included from ./cppgoslin/domain/Headgroup.h:31:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/SumFormulaParserEventHandler.o -c src/parser/SumFormulaParserEventHandler.cppclang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/SumFormulaParser.o -c src/parser/SumFormulaParser.cppclang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/ShorthandParserEventHandler.o -c src/parser/ShorthandParserEventHandler.cppIn file included from src/parser/ShorthandParserEventHandler.cpp:26:In file included from ./cppgoslin/parser/ShorthandParserEventHandler.h:32:In file included from ./cppgoslin/domain/LipidAdduct.h:35:In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:In file included from ./cppgoslin/domain/LipidFullStructure.h:31:In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:In file included from ./cppgoslin/domain/Headgroup.h:31:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/FattyAcidParserEventHandler.o -c src/parser/FattyAcidParserEventHandler.cppIn file included from src/parser/FattyAcidParserEventHandler.cpp:26:In file included from ./cppgoslin/parser/FattyAcidParserEventHandler.h:31:In file included from ./cppgoslin/domain/LipidAdduct.h:35:In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:In file included from ./cppgoslin/domain/LipidFullStructure.h:31:In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:In file included from ./cppgoslin/domain/Headgroup.h:31:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -falign-functions=64 -Wall -g -O2  -I. -fPIC -o src/parser/LipidBaseParserEventHandler.o -c src/parser/LipidBaseParserEventHandler.cppIn file included from src/parser/LipidBaseParserEventHandler.cpp:26:In file included from ./cppgoslin/parser/LipidBaseParserEventHandler.h:31:In file included from ./cppgoslin/domain/LipidAdduct.h:35:In file included from ./cppgoslin/domain/LipidCompleteStructure.h:31:In file included from ./cppgoslin/domain/LipidFullStructure.h:31:In file included from ./cppgoslin/domain/LipidStructureDefined.h:32:In file included from ./cppgoslin/domain/Headgroup.h:31:./cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.ar rcs libcppGoslin.a src/domain/Adduct.o src/domain/LipidMolecularSpecies.o src/domain/LipidSnPosition.o src/domain/LipidStructureDefined.o src/domain/FattyAcid.o src/domain/LipidAdduct.o src/domain/LipidSpecies.o src/domain/LipidFullStructure.o src/domain/LipidCompleteStructure.o src/domain/LipidSpeciesInfo.o src/domain/StringFunctions.o src/domain/LipidClasses.o src/domain/DoubleBonds.o src/domain/FunctionalGroup.o src/domain/Headgroup.o src/domain/Cycle.o src/domain/GenericDatastructures.o src/parser/ParserClasses.o src/parser/KnownParsers.o src/parser/GoslinParserEventHandler.o src/parser/LipidMapsParserEventHandler.o src/parser/SwissLipidsParserEventHandler.o src/parser/HmdbParserEventHandler.o src/parser/SumFormulaParserEventHandler.o src/parser/SumFormulaParser.o src/parser/ShorthandParserEventHandler.o src/parser/FattyAcidParserEventHandler.o src/parser/LipidBaseParserEventHandler.oclang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"." -I"./cppgoslin" -I"./cppgoslin/cppgoslin" -I"./cppgoslin/cppgoslin/domain" -I"./cppgoslin/cppgoslin/parser" -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.oclang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"." -I"./cppgoslin" -I"./cppgoslin/cppgoslin" -I"./cppgoslin/cppgoslin/domain" -I"./cppgoslin/cppgoslin/parser" -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rgoslin.cpp -o rgoslin.oIn file included from rgoslin.cpp:3:In file included from ./cppgoslin/cppgoslin/cppgoslin.h:37:In file included from ./cppgoslin/cppgoslin/domain/Headgroup.h:31:./cppgoslin/cppgoslin/domain/LipidSpeciesInfo.h:53:12: warning: 'LipidSpeciesInfo::to_string' hides overloaded virtual function [-Woverloaded-virtual]    string to_string();           ^./cppgoslin/cppgoslin/domain/FattyAcid.h:47:12: note: hidden overloaded virtual function 'FattyAcid::to_string' declared here: different number of parameters (1 vs 0)    string to_string(LipidLevel level);           ^1 warning generated.clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o rgoslin.so RcppExports.o rgoslin.o cppgoslin/libcppGoslin.a -F/Library/Frameworks/R.framework/.. -framework Rinstalling to /Users/biocbuild/bbs-3.22-bioc/meat/rgoslin.buildbin-libdir/00LOCK-rgoslin/00new/rgoslin/libs** R** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** checking absolute paths in shared objects and dynamic libraries** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (rgoslin)>>>>>>> >>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR rgoslin.buildbin-libdir/rgoslin/libs/rgoslin.so>>>>>>> >>>>>>> Paths before fix:rgoslin.buildbin-libdir/rgoslin/libs/rgoslin.so:rgoslin.so (compatibility version 0.0.0, current version 0.0.0)/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.2)/usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 905.6.0)/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)>>>>>>> Fix with install_name_tool:install_name_tool -change "/usr/local/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libgcc_s.1.1.dylib" "rgoslin.buildbin-libdir/rgoslin/libs/rgoslin.so"install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libgfortran.5.dylib" "rgoslin.buildbin-libdir/rgoslin/libs/rgoslin.so"install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libquadmath.0.dylib" "rgoslin.buildbin-libdir/rgoslin/libs/rgoslin.so">>>>>>> Paths after fix:rgoslin.buildbin-libdir/rgoslin/libs/rgoslin.so:rgoslin.so (compatibility version 0.0.0, current version 0.0.0)/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.2)/usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 905.6.0)/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)

[8]ページ先頭

©2009-2025 Movatter.jp