Movatterモバイル変換

################################################################################################################################################################## Running command:######   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:qpgraph.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings qpgraph_2.44.0.tar.gz###############################################################################################################################################################* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/qpgraph.Rcheck’* using R version 4.5.2 (2025-10-31)* using platform: x86_64-pc-linux-gnu* R was compiled by    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0* running under: Ubuntu 24.04.3 LTS* using session charset: UTF-8* checking for file ‘qpgraph/DESCRIPTION’ ... OK* this is package ‘qpgraph’ version ‘2.44.0’* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘qpgraph’ can be installed ... OK* used C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking loading without being on the library search path ... OK* checking whether startup messages can be suppressed ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... OK* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking contents of ‘data’ directory ... OK* checking data for non-ASCII characters ... OK* checking LazyData ... OK* checking data for ASCII and uncompressed saves ... OK* checking line endings in shell scripts ... OK* checking line endings in C/C++/Fortran sources/headers ... OK* checking line endings in Makefiles ... OK* checking compilation flags in Makevars ... OK* checking for GNU extensions in Makefiles ... OK* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK* checking use of PKG_*FLAGS in Makefiles ... OK* checking compiled code ... NOTENote: information on .o files is not available* checking installed files from ‘inst/doc’ ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OK* checking for unstated dependencies in ‘tests’ ... OK* checking tests ...  Running ‘runTests.R’ OK* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking re-building of vignette outputs ... OK* checking PDF version of manual ... OK* DONEStatus: 1 NOTESee  ‘/home/biocbuild/bbs-3.22-bioc/meat/qpgraph.Rcheck/00check.log’for details.

################################################################################################################################################################## Running command:######   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL qpgraph###############################################################################################################################################################* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’* installing *source* package ‘qpgraph’ ...** this is package ‘qpgraph’ version ‘2.44.0’** using staged installationchecking for gcc... gcc -std=gnu2xchecking for C compiler default output file name... a.outchecking whether the C compiler works... yeschecking whether we are cross compiling... nochecking for suffix of executables... checking for suffix of object files... ochecking whether we are using the GNU C compiler... yeschecking whether gcc -std=gnu2x accepts -g... yeschecking for gcc -std=gnu2x option to accept ANSI C... none neededchecking build system type... x86_64-pc-linux-gnuchecking host system type... x86_64-pc-linux-gnuconfigure: creating ./config.statusconfig.status: creating src/Makevars** libsusing C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’gcc -std=gnu2x -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I/usr/local/include -DUSE_FC_LEN_T  -I/usr/local/include   -g -O2 -Wall -Werror=format-security -Wall -pedantic -fpic  -g -O2  -Wall -Werror=format-security -c cliquer.c -o cliquer.ogcc -std=gnu2x -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I/usr/local/include -DUSE_FC_LEN_T  -I/usr/local/include   -g -O2 -Wall -Werror=format-security -Wall -pedantic -fpic  -g -O2  -Wall -Werror=format-security -c graph.c -o graph.ogcc -std=gnu2x -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I/usr/local/include -DUSE_FC_LEN_T  -I/usr/local/include   -g -O2 -Wall -Werror=format-security -Wall -pedantic -fpic  -g -O2  -Wall -Werror=format-security -c qpgraph.c -o qpgraph.ogcc -std=gnu2x -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I/usr/local/include -DUSE_FC_LEN_T  -I/usr/local/include   -g -O2 -Wall -Werror=format-security -Wall -pedantic -fpic  -g -O2  -Wall -Werror=format-security -c reorder.c -o reorder.ogcc -std=gnu2x -shared -L/home/biocbuild/bbs-3.22-bioc/R/lib -L/usr/local/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -llapack -L/home/biocbuild/bbs-3.22-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.22-bioc/R/lib -lRinstalling to /home/biocbuild/bbs-3.22-bioc/R/site-library/00LOCK-qpgraph/00new/qpgraph/libs** R** data*** moving datasets to lazyload DB** inst** byte-compile and prepare package for lazy loadingCreating a generic function for ‘det’ from package ‘Matrix’ in package ‘qpgraph’** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** checking absolute paths in shared objects and dynamic libraries** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (qpgraph)

R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"Copyright (C) 2025 The R Foundation for Statistical ComputingPlatform: x86_64-pc-linux-gnuR is free software and comes with ABSOLUTELY NO WARRANTY.You are welcome to redistribute it under certain conditions.Type 'license()' or 'licence()' for distribution details.R is a collaborative project with many contributors.Type 'contributors()' for more information and'citation()' on how to cite R or R packages in publications.Type 'demo()' for some demos, 'help()' for on-line help, or'help.start()' for an HTML browser interface to help.Type 'q()' to quit R.> BiocGenerics:::testPackage("qpgraph")Using t tests for zero partial regression coefficients.Using exact likelihood ratio tests.RUNIT TEST PROTOCOL -- Fri Dec 12 03:52:57 2025 *********************************************** Number of test functions: 3 Number of errors: 0 Number of failures: 0  1 Test Suite : qpgraph RUnit Tests - 3 test functions, 0 errors, 0 failuresNumber of test functions: 3 Number of errors: 0 Number of failures: 0 > > proc.time()   user  system elapsed  13.727   0.610  14.325