################################################################################################################################################################## Running command:###### rm -rf mgsa.buildbin-libdir && mkdir mgsa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mgsa_1.58.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R mgsa.buildbin-libdir###############################################################################################################################################################>>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=mgsa.buildbin-libdir mgsa_1.58.0.tar.gz'>>>>>>> * installing *source* package ‘mgsa’ ...** this is package ‘mgsa’ version ‘1.58.0’** using staged installationconfigure: creating ./config.statusconfig.status: creating src/Makevars** libsusing C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’using SDK: ‘MacOSX11.3.1.sdk’clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I. -fPIC -falign-functions=64 -Wall -g -O2 -c mgsa-core.c -o mgsa-core.oclang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I. -fPIC -falign-functions=64 -Wall -g -O2 -c mgsa.c -o mgsa.omgsa.c:67:23: warning: more '%' conversions than data arguments [-Wformat-insufficient-args] error("Parameter '%s' has been requested to be discrete but no values were specified"); ~^1 warning generated.clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I. -fPIC -falign-functions=64 -Wall -g -O2 -c mt.c -o mt.oclang -arch arm64 -std=gnu2x -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o mgsa.so mgsa-core.o mgsa.o mt.o -F/Library/Frameworks/R.framework/.. -framework Rinstalling to /Users/biocbuild/bbs-3.22-bioc/meat/mgsa.buildbin-libdir/00LOCK-mgsa/00new/mgsa/libs** R** data** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** checking absolute paths in shared objects and dynamic libraries** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (mgsa)>>>>>>> >>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR mgsa.buildbin-libdir/mgsa/libs/mgsa.so>>>>>>> >>>>>>> Paths before fix:mgsa.buildbin-libdir/mgsa/libs/mgsa.so:mgsa.so (compatibility version 0.0.0, current version 0.0.0)/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.2)/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)>>>>>>> Fix with install_name_tool:install_name_tool -change "/usr/local/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libgcc_s.1.1.dylib" "mgsa.buildbin-libdir/mgsa/libs/mgsa.so"install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libgfortran.5.dylib" "mgsa.buildbin-libdir/mgsa/libs/mgsa.so"install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libquadmath.0.dylib" "mgsa.buildbin-libdir/mgsa/libs/mgsa.so">>>>>>> Paths after fix:mgsa.buildbin-libdir/mgsa/libs/mgsa.so:mgsa.so (compatibility version 0.0.0, current version 0.0.0)/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.2)/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)