Movatterモバイル変換

################################################################################################################################################################## Running command:######   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:lisaClust.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings lisaClust_1.18.0.tar.gz###############################################################################################################################################################* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/lisaClust.Rcheck’* using R version 4.5.2 (2025-10-31)* using platform: x86_64-apple-darwin20* R was compiled by    Apple clang version 14.0.0 (clang-1400.0.29.202)    GNU Fortran (GCC) 14.2.0* running under: macOS Monterey 12.7.6* using session charset: UTF-8* using option ‘--no-vignettes’* checking for file ‘lisaClust/DESCRIPTION’ ... OK* checking extension type ... Package* this is package ‘lisaClust’ version ‘1.18.0’* package encoding: UTF-8* checking package namespace information ... OK* checking package dependencies ... INFOImports includes 21 non-default packages.Importing from so many packages makes the package vulnerable to any ofthem becoming unavailable.  Move as many as possible to Suggests anduse conditionally.* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘lisaClust’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... NOTEgetK: no visible binding for global variable ‘j’getK: no visible binding for global variable ‘cellTypeI’getK: no visible binding for global variable ‘i’getK: no visible binding for global variable ‘d’getK: no visible binding for global variable ‘cellTypeJ’getK: no visible binding for global variable ‘value’getK: no visible global function definition for ‘.’getK: no visible binding for global variable ‘wt’getL: no visible binding for global variable ‘j’getL: no visible binding for global variable ‘cellTypeI’getL: no visible binding for global variable ‘i’getL: no visible binding for global variable ‘d’getL: no visible binding for global variable ‘cellTypeJ’getL: no visible binding for global variable ‘value’getL: no visible global function definition for ‘.’getL: no visible binding for global variable ‘wt’inhomLocalK: no visible binding for global variable ‘i’regionMap: no visible binding for global variable ‘Var1’regionMap: no visible binding for global variable ‘Var2’regionMap: no visible binding for global variable ‘Freq’regionMap: no visible binding for global variable ‘Freq2’Undefined global functions or variables:  . Freq Freq2 Var1 Var2 cellTypeI cellTypeJ d i j value wt* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OKExamples with CPU (user + system) or elapsed time > 5s               user system elapsedhatchingPlot 70.291  2.079  79.241lisa         10.729  0.376  12.658lisaClust     8.521  0.224   9.750scale_region  7.571  0.138   8.610regionMap     6.223  0.162   7.037* checking for unstated dependencies in ‘tests’ ... OK* checking tests ...  Running ‘testthat.R’ OK* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking running R code from vignettes ... SKIPPED* checking re-building of vignette outputs ... SKIPPED* checking PDF version of manual ... OK* DONEStatus: 1 NOTESee  ‘/Users/biocbuild/bbs-3.22-bioc/meat/lisaClust.Rcheck/00check.log’for details.

################################################################################################################################################################## Running command:######   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL lisaClust###############################################################################################################################################################* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’* installing *source* package ‘lisaClust’ ...** this is package ‘lisaClust’ version ‘1.18.0’** using staged installationWarning in person1(given = given[[i]], family = family[[i]], middle = middle[[i]],  :  It is recommended to use ‘given’ instead of ‘middle’.** R** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (lisaClust)

R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"Copyright (C) 2025 The R Foundation for Statistical ComputingPlatform: x86_64-apple-darwin20R is free software and comes with ABSOLUTELY NO WARRANTY.You are welcome to redistribute it under certain conditions.Type 'license()' or 'licence()' for distribution details.R is a collaborative project with many contributors.Type 'contributors()' for more information and'citation()' on how to cite R or R packages in publications.Type 'demo()' for some demos, 'help()' for on-line help, or'help.start()' for an HTML browser interface to help.Type 'q()' to quit R.> # This file is part of the standard setup for testthat.> # It is recommended that you do not modify it.> #> # Where should you do additional test configuration?> # Learn more about the roles of various files in:> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview> # * https://testthat.r-lib.org/articles/special-files.html> > library(testthat)> library(lisaClust)> > test_check("lisaClust")see ?SpatialDatasets and browseVignettes('SpatialDatasets') for documentationloading from cacheGenerating local L-curves.[ FAIL 0 | WARN 5 | SKIP 0 | PASS 1 ][ FAIL 0 | WARN 5 | SKIP 0 | PASS 1 ]> > proc.time()   user  system elapsed  76.769   3.598  88.672