| Back toMultiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-12-15 12:06 -0500 (Mon, 15 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4882 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4673 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" | 4607 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4671 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package904/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| goatea 1.0.0 (landing page) Maurits Unkel
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
| To the developers/maintainers of the goatea package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/goatea.git to reflect on this report. SeeTroubleshooting Build Report for more information. - Use the followingRenviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. SeeRenviron.bioc for more information. |
| Package: goatea |
| Version: 1.0.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data goatea |
| StartedAt: 2025-12-11 19:54:24 -0500 (Thu, 11 Dec 2025) |
| EndedAt: 2025-12-11 19:59:14 -0500 (Thu, 11 Dec 2025) |
| EllapsedTime: 290.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
################################################################################################################################################################## Running command:###### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data goatea###############################################################################################################################################################* checking for file ‘goatea/DESCRIPTION’ ... OK* preparing ‘goatea’:* checking DESCRIPTION meta-information ... OK* installing the package to build vignettes* creating vignettes ... ERROR--- re-building ‘goatea.Rmd’ using rmarkdowntrying URL 'https://github.com/ftwkoopmans/goat/raw/main/analyses/goat_manuscript_datasets.rda'Content type 'application/octet-stream' length 1074180 bytes (1.0 MB)==================================================downloaded 1.0 MB2025-12-11 19:58:24.926 R[10339:113054957] XType: com.apple.fonts is not accessible.2025-12-11 19:58:24.926 R[10339:113054957] XType: XTFontStaticRegistry is enabled.Warning: ggrepel: 2228 unlabeled data points (too many overlaps). Consider increasing max.overlapsQuitting from goatea.Rmd:321-331 [tree plot]~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~<error/rlang_error>Error in `treeplot_internal()`:! unused argument (cluster.params = list(5, 3))---Backtrace: ▆ 1. └─goatea::plot_termtree(...) 2. ├─base::withCallingHandlers(...) 3. ├─enrichplot::treeplot(...) 4. └─enrichplot::treeplot(...)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Error: processing vignette 'goatea.Rmd' failed with diagnostics:unused argument (cluster.params = list(5, 3))--- failed re-building ‘goatea.Rmd’SUMMARY: processing the following file failed: ‘goatea.Rmd’Error: Vignette re-building failed.Execution halted