################################################################################################################################################################## Running command:###### rm -rf flowFP.buildbin-libdir && mkdir flowFP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowFP_1.68.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R flowFP.buildbin-libdir###############################################################################################################################################################>>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=flowFP.buildbin-libdir flowFP_1.68.0.tar.gz'>>>>>>> * installing *source* package ‘flowFP’ ...** this is package ‘flowFP’ version ‘1.68.0’** using staged installationconfigure: creating ./config.statusconfig.status: creating src/Makevars** libsusing C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’using SDK: ‘MacOSX11.3.1.sdk’clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c flowFP.c -o flowFP.oflowFP.c:189:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] if(((!isReal(rmatrix)) & !isInteger(rmatrix)) | isNull(dim) | (LENGTH(dim)!=2)) ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &&flowFP.c:189:6: note: cast one or both operands to int to silence this warning1 warning generated.clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.oclang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c split_utils.c -o split_utils.osplit_utils.c:22:6: warning: variable 'num_low' set but not used [-Wunused-but-set-variable] int num_low = 0; ^split_utils.c:23:6: warning: variable 'num_hi' set but not used [-Wunused-but-set-variable] int num_hi = 0; ^2 warnings generated.clang -arch arm64 -std=gnu2x -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o flowFP.so flowFP.o init.o split_utils.o -F/Library/Frameworks/R.framework/.. -framework Rinstalling to /Users/biocbuild/bbs-3.22-bioc/meat/flowFP.buildbin-libdir/00LOCK-flowFP/00new/flowFP/libs** R** data** inst** byte-compile and prepare package for lazy loadingCreating a generic function for ‘append’ from package ‘base’ in package ‘flowFP’** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** checking absolute paths in shared objects and dynamic libraries** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (flowFP)>>>>>>> >>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR flowFP.buildbin-libdir/flowFP/libs/flowFP.so>>>>>>> >>>>>>> Paths before fix:flowFP.buildbin-libdir/flowFP/libs/flowFP.so:flowFP.so (compatibility version 0.0.0, current version 0.0.0)/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.2)/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)>>>>>>> Fix with install_name_tool:install_name_tool -change "/usr/local/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libgcc_s.1.1.dylib" "flowFP.buildbin-libdir/flowFP/libs/flowFP.so"install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libgfortran.5.dylib" "flowFP.buildbin-libdir/flowFP/libs/flowFP.so"install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libquadmath.0.dylib" "flowFP.buildbin-libdir/flowFP/libs/flowFP.so">>>>>>> Paths after fix:flowFP.buildbin-libdir/flowFP/libs/flowFP.so:flowFP.so (compatibility version 0.0.0, current version 0.0.0)/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.2)/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)
