Movatterモバイル変換

################################################################################################################################################################## Running command:######   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:epiNEM.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings epiNEM_1.34.0.tar.gz###############################################################################################################################################################* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/epiNEM.Rcheck’* using R version 4.5.2 (2025-10-31)* using platform: x86_64-pc-linux-gnu* R was compiled by    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0* running under: Ubuntu 24.04.3 LTS* using session charset: UTF-8* checking for file ‘epiNEM/DESCRIPTION’ ... OK* checking extension type ... Package* this is package ‘epiNEM’ version ‘1.34.0’* package encoding: UTF-8* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘epiNEM’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking loading without being on the library search path ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... NOTEForeign function call to a different package:  .Call("getTruthTable_R", ..., PACKAGE = "BoolNet")See chapter ‘System and foreign language interfaces’ in the ‘Writing RExtensions’ manual.* checking R code for possible problems ... NOTESimEpiNEM: no visible global function definition for ‘epiNEM2Bg’SimEpiNEM: no visible global function definition for ‘dummyCNOlist’SimEpiNEM: no visible global function definition for ‘readSIF’SimEpiNEM: no visible global function definition for ‘preprocessing’SimEpiNEM: no visible global function definition for ‘absorption’SimEpiNEM: no visible global function definition for ‘bnem’SimEpiNEM: no visible binding for global variable ‘popSize’SimEpiNEM: no visible global function definition for ‘computeFc’SimEpiNEM: no visible global function definition for  ‘simulateStatesRecursive’SimEpiNEM: no visible global function definition for ‘dnf2adj’epiNEM: no visible binding for global variable ‘inference’plot.epiSim: no visible binding for global variable ‘sim’plot.epiSim: no visible global function definition for ‘layout’plot.epiSim: no visible global function definition for ‘boxplot’plot.epiSim: no visible global function definition for ‘abline’plot.epiSim: no visible global function definition for ‘axis’Undefined global functions or variables:  abline absorption axis bnem boxplot computeFc dnf2adj dummyCNOlist  epiNEM2Bg inference layout popSize preprocessing readSIF sim  simulateStatesRecursiveConsider adding  importFrom("graphics", "abline", "axis", "boxplot", "layout")to your NAMESPACE file.* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking contents of ‘data’ directory ... OK* checking data for non-ASCII characters ... OK* checking LazyData ... OK* checking data for ASCII and uncompressed saves ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OKExamples with CPU (user + system) or elapsed time > 5s                user system elapsedplot.epiScreen 8.963  0.078   9.042epiScreen      8.889  0.069   8.959SimEpiNEM      6.613  0.116   6.739plot.epiSim    6.210  0.038   6.248* checking for unstated dependencies in ‘tests’ ... OK* checking tests ...  Running ‘runTests.R’ OK* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking re-building of vignette outputs ... OK* checking PDF version of manual ... OK* DONEStatus: 2 NOTEsSee  ‘/home/biocbuild/bbs-3.22-bioc/meat/epiNEM.Rcheck/00check.log’for details.

################################################################################################################################################################## Running command:######   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL epiNEM###############################################################################################################################################################* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’* installing *source* package ‘epiNEM’ ...** this is package ‘epiNEM’ version ‘1.34.0’** using staged installation** R** data*** moving datasets to lazyload DB** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (epiNEM)

R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"Copyright (C) 2025 The R Foundation for Statistical ComputingPlatform: x86_64-pc-linux-gnuR is free software and comes with ABSOLUTELY NO WARRANTY.You are welcome to redistribute it under certain conditions.Type 'license()' or 'licence()' for distribution details.R is a collaborative project with many contributors.Type 'contributors()' for more information and'citation()' on how to cite R or R packages in publications.Type 'demo()' for some demos, 'help()' for on-line help, or'help.start()' for an HTML browser interface to help.Type 'q()' to quit R.> BiocGenerics:::testPackage("epiNEM")[1] "Progress (of 1 iterations):"1...RUNIT TEST PROTOCOL -- Fri Dec 12 00:17:52 2025 *********************************************** Number of test functions: 0 Number of errors: 0 Number of failures: 0  1 Test Suite : epiNEM RUnit Tests - 0 test functions, 0 errors, 0 failuresNumber of test functions: 0 Number of errors: 0 Number of failures: 0 > > proc.time()   user  system elapsed   5.668   0.370   6.025