Movatterモバイル変換

################################################################################################################################################################## Running command:######   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ctc.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ctc_1.84.0.tar.gz###############################################################################################################################################################* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/ctc.Rcheck’* using R version 4.5.2 Patched (2025-11-04 r88984)* using platform: aarch64-apple-darwin20* R was compiled by    Apple clang version 16.0.0 (clang-1600.0.26.6)    GNU Fortran (GCC) 14.2.0* running under: macOS Ventura 13.7.8* using session charset: UTF-8* using option ‘--no-vignettes’* checking for file ‘ctc/DESCRIPTION’ ... OK* this is package ‘ctc’ version ‘1.84.0’* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘ctc’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... NOTEMalformed Title field: should not end in a period.Malformed Description field: should contain one or more complete sentences.* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking whether startup messages can be suppressed ... OK* checking dependencies in R code ... NOTE'library' or 'require' call to ‘amap’ which was already attached by Depends.  Please remove these calls from your code.Package in Depends field not imported from: ‘amap’  These packages need to be imported from (in the NAMESPACE file)  for when this namespace is loaded but not attached.* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... NOTE.First.lib: warning in .packages(all = TRUE): partial argument match of  'all' to 'all.available'.onLoad: warning in .packages(all = TRUE): partial argument match of  'all' to 'all.available'hclust2treeview: warning in .packages(all = TRUE): partial argument  match of 'all' to 'all.available'hclust2treeview: no visible global function definition for ‘hclust’hclust2treeview: no visible global function definition for ‘dist’r2atr: no visible global function definition for ‘write.table’r2cdt: no visible global function definition for ‘write.table’r2cluster: no visible global function definition for ‘write.table’r2gtr: no visible global function definition for ‘write.table’r2xcluster: no visible global function definition for ‘write.table’read.eisen: no visible global function definition for ‘read.table’xcluster2r: no visible global function definition for ‘read.table’Undefined global functions or variables:  dist hclust read.table write.tableConsider adding  importFrom("stats", "dist", "hclust")  importFrom("utils", "read.table", "write.table")to your NAMESPACE file.* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking sizes of PDF files under ‘inst/doc’ ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OK* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking running R code from vignettes ... SKIPPED* checking re-building of vignette outputs ... SKIPPED* checking PDF version of manual ... OK* DONEStatus: 3 NOTEsSee  ‘/Users/biocbuild/bbs-3.22-bioc/meat/ctc.Rcheck/00check.log’for details.

################################################################################################################################################################## Running command:######   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ctc###############################################################################################################################################################* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’* installing *source* package ‘ctc’ ...** this is package ‘ctc’ version ‘1.84.0’** using staged installation** R** demo** exec** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (ctc)