Movatterモバイル変換

################################################################################################################################################################## Running command:######   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:comapr.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings comapr_1.14.0.tar.gz###############################################################################################################################################################* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/comapr.Rcheck’* using R version 4.5.2 (2025-10-31)* using platform: x86_64-apple-darwin20* R was compiled by    Apple clang version 14.0.0 (clang-1400.0.29.202)    GNU Fortran (GCC) 14.2.0* running under: macOS Monterey 12.7.6* using session charset: UTF-8* using option ‘--no-vignettes’* checking for file ‘comapr/DESCRIPTION’ ... OK* this is package ‘comapr’ version ‘1.14.0’* package encoding: UTF-8* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘comapr’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... OK* checking Rd files ... NOTEcheckRd: (-1) perCellChrQC.Rd:22: Lost braces; missing escapes or markup?    22 | \item{path, }{the path to the files, with name patterns *{chrom}_vi.mtx,       |                                                          ^checkRd: (-1) perCellChrQC.Rd:23: Lost braces; missing escapes or markup?    23 | *{chrom}_viSegInfo.txt, end with slash}       |  ^checkRd: (-1) perSegChrQC.Rd:21: Lost braces; missing escapes or markup?    21 | \item{path, }{the path to the files, with name patterns *{chrom}_vi.mtx,       |                                                          ^checkRd: (-1) perSegChrQC.Rd:22: Lost braces; missing escapes or markup?    22 | *{chrom}_viSegInfo.txt, end with slash}       |  ^checkRd: (-1) readHapState.Rd:28: Lost braces; missing escapes or markup?    28 | \item{path, }{the path to the files, with name patterns *{chrom}_vi.mtx,       |                                                          ^checkRd: (-1) readHapState.Rd:29: Lost braces; missing escapes or markup?    29 | *{chrom}_viSegInfo.txt, end with slash}       |  ^* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking contents of ‘data’ directory ... OK* checking data for non-ASCII characters ... OK* checking data for ASCII and uncompressed saves ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OKExamples with CPU (user + system) or elapsed time > 5s               user system elapsedbootstrapDist 5.119  0.227   5.189* checking for unstated dependencies in ‘tests’ ... OK* checking tests ...  Running ‘testthat.R’ ERRORRunning the tests in ‘tests/testthat.R’ failed.Last 13 lines of output:  Differences:  `actual`:   FALSE  `expected`: TRUE     ── Failure ('test-plotmissingGT.R:15:3'): Plot missing GT works ────────────────  Expected `class(p4)[1] == "gg"` to be TRUE.  Differences:  `actual`:   FALSE  `expected`: TRUE       [ FAIL 2 | WARN 3 | SKIP 0 | PASS 89 ]  Error:  ! Test failures.  Execution halted* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking running R code from vignettes ... SKIPPED* checking re-building of vignette outputs ... SKIPPED* checking PDF version of manual ... OK* DONEStatus: 1 ERROR, 1 NOTESee  ‘/Users/biocbuild/bbs-3.22-bioc/meat/comapr.Rcheck/00check.log’for details.

################################################################################################################################################################## Running command:######   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL comapr###############################################################################################################################################################* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’* installing *source* package ‘comapr’ ...** this is package ‘comapr’ version ‘1.14.0’** using staged installation** R** data** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (comapr)

R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"Copyright (C) 2025 The R Foundation for Statistical ComputingPlatform: x86_64-apple-darwin20R is free software and comes with ABSOLUTELY NO WARRANTY.You are welcome to redistribute it under certain conditions.Type 'license()' or 'licence()' for distribution details.R is a collaborative project with many contributors.Type 'contributors()' for more information and'citation()' on how to cite R or R packages in publications.Type 'demo()' for some demos, 'help()' for on-line help, or'help.start()' for an HTML browser interface to help.Type 'q()' to quit R.> library(testthat)> library(comapr)> > test_check("comapr")Saving _problems/test-plotmissingGT-12.RSaving _problems/test-plotmissingGT-15.R[ FAIL 2 | WARN 3 | SKIP 0 | PASS 89 ]══ Failed tests ════════════════════════════════════════════════════════════════── Failure ('test-plotmissingGT.R:12:3'): Plot missing GT works ────────────────Expected `class(p1)[1] == "gg"` to be TRUE.Differences:`actual`:   FALSE`expected`: TRUE ── Failure ('test-plotmissingGT.R:15:3'): Plot missing GT works ────────────────Expected `class(p4)[1] == "gg"` to be TRUE.Differences:`actual`:   FALSE`expected`: TRUE [ FAIL 2 | WARN 3 | SKIP 0 | PASS 89 ]Error:! Test failures.Execution halted