Movatterモバイル変換

################################################################################################################################################################## Running command:######   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ccrepe.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ccrepe_1.46.0.tar.gz###############################################################################################################################################################* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/ccrepe.Rcheck’* using R version 4.5.2 Patched (2025-11-04 r88984)* using platform: aarch64-apple-darwin20* R was compiled by    Apple clang version 16.0.0 (clang-1600.0.26.6)    GNU Fortran (GCC) 14.2.0* running under: macOS Ventura 13.7.8* using session charset: UTF-8* using option ‘--no-vignettes’* checking for file ‘ccrepe/DESCRIPTION’ ... OK* checking extension type ... Package* this is package ‘ccrepe’ version ‘1.46.0’* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘ccrepe’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... NOTELicense stub is invalid DCF.* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... NOTEcalculate.z.stat.and.p.value: no visible global function definition for  ‘var’calculate.z.stat.and.p.value: no visible global function definition for  ‘pnorm’ccrepe: no visible binding for global variable ‘cor’nc.score: no visible global function definition for ‘na.omit’nc.score: no visible global function definition for ‘complete.cases’qc_filter: no visible binding for global variable ‘x’Undefined global functions or variables:  complete.cases cor na.omit pnorm var xConsider adding  importFrom("stats", "complete.cases", "cor", "na.omit", "pnorm", "var")to your NAMESPACE file.* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking sizes of PDF files under ‘inst/doc’ ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OK* checking for unstated dependencies in ‘tests’ ... OK* checking tests ...  Running ‘runTests.R’ ERRORRunning the tests in ‘tests/runTests.R’ failed.Last 13 lines of output:     1 Test Suite :   ccrepe RUnit Tests - 2 test functions, 1 error, 0 failures  ERROR in /private/tmp/Rtmpmp7fWR/RLIBS_fce611297144/ccrepe/unitTests/test_ccrepe.R: Error while sourcing  /private/tmp/Rtmpmp7fWR/RLIBS_fce611297144/ccrepe/unitTests/test_ccrepe.R : Error in attributes(.Data) <- c(attributes(.Data), attrib) :     all attributes must have names [3 does not]    Test files with failing tests       test_ccrepe.R        /private/tmp/Rtmpmp7fWR/RLIBS_fce611297144/ccrepe/unitTests/test_ccrepe.R       Error in BiocGenerics:::testPackage("ccrepe") :     unit tests failed for package ccrepe  Execution halted* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking running R code from vignettes ... SKIPPED* checking re-building of vignette outputs ... SKIPPED* checking PDF version of manual ... OK* DONEStatus: 1 ERROR, 2 NOTEsSee  ‘/Users/biocbuild/bbs-3.22-bioc/meat/ccrepe.Rcheck/00check.log’for details.

################################################################################################################################################################## Running command:######   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ccrepe###############################################################################################################################################################* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’* installing *source* package ‘ccrepe’ ...** this is package ‘ccrepe’ version ‘1.46.0’** using staged installation** R** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (ccrepe)

R version 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble"Copyright (C) 2025 The R Foundation for Statistical ComputingPlatform: aarch64-apple-darwin20R is free software and comes with ABSOLUTELY NO WARRANTY.You are welcome to redistribute it under certain conditions.Type 'license()' or 'licence()' for distribution details.R is a collaborative project with many contributors.Type 'contributors()' for more information and'citation()' on how to cite R or R packages in publications.Type 'demo()' for some demos, 'help()' for on-line help, or'help.start()' for an HTML browser interface to help.Type 'q()' to quit R.> BiocGenerics:::testPackage("ccrepe")Error in attributes(.Data) <- c(attributes(.Data), attrib) :   all attributes must have names [3 does not]RUNIT TEST PROTOCOL -- Fri Dec 12 18:44:25 2025 *********************************************** Number of test functions: 2 Number of errors: 1 Number of failures: 0  1 Test Suite : ccrepe RUnit Tests - 2 test functions, 1 error, 0 failuresERROR in /private/tmp/Rtmpmp7fWR/RLIBS_fce611297144/ccrepe/unitTests/test_ccrepe.R: Error while sourcing  /private/tmp/Rtmpmp7fWR/RLIBS_fce611297144/ccrepe/unitTests/test_ccrepe.R : Error in attributes(.Data) <- c(attributes(.Data), attrib) :   all attributes must have names [3 does not]Test files with failing tests   test_ccrepe.R      /private/tmp/Rtmpmp7fWR/RLIBS_fce611297144/ccrepe/unitTests/test_ccrepe.R Error in BiocGenerics:::testPackage("ccrepe") :   unit tests failed for package ccrepeExecution halted