################################################################################################################################################################## Running command:###### rm -rf bacon.buildbin-libdir && mkdir bacon.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh bacon_1.38.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R bacon.buildbin-libdir###############################################################################################################################################################>>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=bacon.buildbin-libdir bacon_1.38.0.tar.gz'>>>>>>> * installing *source* package ‘bacon’ ...** this is package ‘bacon’ version ‘1.38.0’** using staged installation** libsusing C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’using SDK: ‘MacOSX11.3.1.sdk’clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Rinit.c -o Rinit.oRinit.c:11:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] NULL ^~~~ { }/Library/Developer/CommandLineTools/usr/lib/clang/14.0.0/include/stddef.h:89:16: note: expanded from macro 'NULL'# define NULL ((void*)0) ^~~~~~~~~~1 warning generated.clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bacon.c -o bacon.oclang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o bacon.so Rinit.o bacon.o -F/Library/Frameworks/R.framework/.. -framework Rinstalling to /Users/biocbuild/bbs-3.22-bioc/meat/bacon.buildbin-libdir/00LOCK-bacon/00new/bacon/libs** R** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** checking absolute paths in shared objects and dynamic libraries** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (bacon)>>>>>>> >>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR bacon.buildbin-libdir/bacon/libs/bacon.so>>>>>>> >>>>>>> Paths before fix:bacon.buildbin-libdir/bacon/libs/bacon.so:bacon.so (compatibility version 0.0.0, current version 0.0.0)/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.2)/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)>>>>>>> Fix with install_name_tool:install_name_tool -change "/usr/local/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libgcc_s.1.1.dylib" "bacon.buildbin-libdir/bacon/libs/bacon.so"install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libgfortran.5.dylib" "bacon.buildbin-libdir/bacon/libs/bacon.so"install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libquadmath.0.dylib" "bacon.buildbin-libdir/bacon/libs/bacon.so">>>>>>> Paths after fix:bacon.buildbin-libdir/bacon/libs/bacon.so:bacon.so (compatibility version 0.0.0, current version 0.0.0)/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.2)/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)