This page was generated on 2025-12-15 12:05 -0500 (Mon, 15 Dec 2025).
CHECK results for adSplit on merida1
To the developers/maintainers of the adSplit package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/adSplit.git to reflect on this report. SeeTroubleshooting Build Report for more information. - Use the followingRenviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. SeeRenviron.bioc for more information.
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raw results
Summary
| Package: adSplit |
| Version: 1.80.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:adSplit.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings adSplit_1.80.0.tar.gz |
| StartedAt: 2025-12-12 00:31:32 -0500 (Fri, 12 Dec 2025) |
| EndedAt: 2025-12-12 00:39:45 -0500 (Fri, 12 Dec 2025) |
| EllapsedTime: 493.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: adSplit.Rcheck |
| Warnings: 0 |
Command output
################################################################################################################################################################## Running command:###### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:adSplit.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings adSplit_1.80.0.tar.gz###############################################################################################################################################################* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/adSplit.Rcheck’* using R version 4.5.2 (2025-10-31)* using platform: x86_64-apple-darwin20* R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0* running under: macOS Monterey 12.7.6* using session charset: UTF-8* using option ‘--no-vignettes’* checking for file ‘adSplit/DESCRIPTION’ ... OK* this is package ‘adSplit’ version ‘1.80.0’* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘adSplit’ can be installed ... OK* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’* used SDK: ‘MacOSX11.3.1.sdk’* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... OK* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking contents of ‘data’ directory ... OK* checking data for non-ASCII characters ... OK* checking data for ASCII and uncompressed saves ... OK* checking line endings in C/C++/Fortran sources/headers ... OK* checking line endings in Makefiles ... OK* checking for GNU extensions in Makefiles ... OK* checking include directives in Makefiles ... OK* checking compiled code ... NOTENote: information on .o files is not availableFile ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/adSplit/libs/adSplit.so’: Found ‘_printf’, possibly from ‘printf’ (C)Compiled code should not call entry points which might terminate R norwrite to stdout/stderr instead of to the console, nor use Fortran I/Onor system RNGs nor [v]sprintf. The detected symbols are linked intothe code but might come from libraries and not actually be called.See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.* checking sizes of PDF files under ‘inst/doc’ ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OKExamples with CPU (user + system) or elapsed time > 5s user system elapsedrandomDiana2means 65.719 0.869 70.362makeEID2PROBESenv 63.008 0.805 70.706drawRandomPS 62.004 0.778 66.323adSplit 12.491 0.605 42.093image.splitSet 0.275 0.028 5.336* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking running R code from vignettes ... SKIPPED* checking re-building of vignette outputs ... SKIPPED* checking PDF version of manual ... OK* DONEStatus: 1 NOTESee ‘/Users/biocbuild/bbs-3.22-bioc/meat/adSplit.Rcheck/00check.log’for details.
Installation output
adSplit.Rcheck/00install.out
################################################################################################################################################################## Running command:###### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL adSplit###############################################################################################################################################################* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’* installing *source* package ‘adSplit’ ...** this is package ‘adSplit’ version ‘1.80.0’** using staged installation** libsusing C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’using SDK: ‘MacOSX11.3.1.sdk’clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c adSplit.cpp -o adSplit.oclang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o adSplit.so adSplit.o -F/Library/Frameworks/R.framework/.. -framework Rinstalling to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-adSplit/00new/adSplit/libs** R** data** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** checking absolute paths in shared objects and dynamic libraries** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (adSplit)
Tests output
Example timings
adSplit.Rcheck/adSplit-Ex.timings
| name | user | system | elapsed |
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| adSplit | 12.491 | 0.605 | 42.093 | |
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| diana2means | 3.310 | 0.185 | 3.548 | |
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| drawRandomPS | 62.004 | 0.778 | 66.323 | |
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| golubKEGGSplits | 0.002 | 0.002 | 0.005 | |
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| hist.splitSet | 0.046 | 0.017 | 0.099 | |
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| image.splitSet | 0.275 | 0.028 | 5.336 | |
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| makeEID2PROBESenv | 63.008 | 0.805 | 70.706 | |
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| print.splitSet | 0.002 | 0.003 | 0.005 | |
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| randomDiana2means | 65.719 | 0.869 | 70.362 | |
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