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Back toMultiple platform build/check report for BioC 3.22:   simplified   long
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This page was generated on 2025-12-15 12:08 -0500 (Mon, 15 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble"4882
merida1macOS 12.7.6 Montereyx86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble"4673
kjohnson1macOS 13.7.5 Venturaarm644.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble"4607
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six"4671
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package2150/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SUITOR 1.12.0  (landing page)
Bill Wheeler
Snapshot Date: 2025-12-11 13:45 -0500 (Thu, 11 Dec 2025)
git_url: https://git.bioconductor.org/packages/SUITOR
git_branch: RELEASE_3_22
git_last_commit: c64d23d
git_last_commit_date: 2025-10-29 11:17:09 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.7.5 Ventura / arm64  ERROR    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  

INSTALL results for SUITOR on kjohnson1

To the developers/maintainers of the SUITOR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SUITOR.git to reflect on this report. SeeTroubleshooting Build Report for more information.
- Use the followingRenviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. SeeRenviron.bioc for more information.

raw results


Summary

Package: SUITOR
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SUITOR
StartedAt: 2025-12-11 15:23:32 -0500 (Thu, 11 Dec 2025)
EndedAt: 2025-12-11 15:23:34 -0500 (Thu, 11 Dec 2025)
EllapsedTime: 1.8 seconds
RetCode: 1
Status:  ERROR  

Command output

################################################################################################################################################################## Running command:######   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SUITOR###############################################################################################################################################################* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’* installing *source* package ‘SUITOR’ ...** this is package ‘SUITOR’ version ‘1.12.0’** using staged installation** libsusing C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’using SDK: ‘MacOSX11.3.1.sdk’clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c SUITOR_init.c -o SUITOR_init.oclang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c source.c -o source.osource.c:166:28: error: unknown type name 'n'static double * dVec_alloc(n, initFlag, initVal)                           ^source.c:166:31: error: unknown type name 'initFlag'static double * dVec_alloc(n, initFlag, initVal)                              ^source.c:166:41: error: unknown type name 'initVal'static double * dVec_alloc(n, initFlag, initVal)                                        ^source.c:166:49: error: expected ';' after top level declaratorstatic double * dVec_alloc(n, initFlag, initVal)                                                ^                                                ;source.c:169:1: error: expected identifier or '('{^source.c:185:25: error: unknown type name 'n'static int * iVec_alloc(n, initFlag, initVal)                        ^source.c:185:28: error: unknown type name 'initFlag'static int * iVec_alloc(n, initFlag, initVal)                           ^source.c:185:38: error: unknown type name 'initVal'static int * iVec_alloc(n, initFlag, initVal)                                     ^source.c:185:46: error: expected ';' after top level declaratorstatic int * iVec_alloc(n, initFlag, initVal)                                             ^                                             ;source.c:186:18: error: redefinition of 'initVal' with a different type: 'int' vs 'double'int n, initFlag, initVal;                 ^source.c:168:8: note: previous definition is heredouble initVal;       ^source.c:187:1: error: expected identifier or '('{^source.c:203:26: error: unknown type name 'n'static char * cVec_alloc(n, initFlag, initVal)                         ^source.c:203:29: error: unknown type name 'initFlag'static char * cVec_alloc(n, initFlag, initVal)                            ^source.c:203:39: error: unknown type name 'initVal'static char * cVec_alloc(n, initFlag, initVal)                                      ^source.c:203:47: error: expected ';' after top level declaratorstatic char * cVec_alloc(n, initFlag, initVal)                                              ^                                              ;source.c:205:6: error: redefinition of 'initVal' with a different type: 'char' vs 'double'char initVal;     ^source.c:168:8: note: previous definition is heredouble initVal;       ^source.c:206:1: error: expected identifier or '('{^source.c:222:23: error: unknown type name 'v'static void copy_dVec(v, n, ret)                      ^source.c:222:26: error: unknown type name 'n'static void copy_dVec(v, n, ret)                         ^fatal error: too many errors emitted, stopping now [-ferror-limit=]20 errors generated.make: *** [source.o] Error 1ERROR: compilation failed for package ‘SUITOR’* removing ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/SUITOR’
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