Movatterモバイル変換

################################################################################################################################################################## Running command:######   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:RCAS.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings RCAS_1.36.0.tar.gz###############################################################################################################################################################* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/RCAS.Rcheck’* using R version 4.5.2 (2025-10-31)* using platform: x86_64-pc-linux-gnu* R was compiled by    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0* running under: Ubuntu 24.04.3 LTS* using session charset: UTF-8* checking for file ‘RCAS/DESCRIPTION’ ... OK* checking extension type ... Package* this is package ‘RCAS’ version ‘1.36.0’* checking package namespace information ... OK* checking package dependencies ... INFOImports includes 24 non-default packages.Importing from so many packages makes the package vulnerable to any ofthem becoming unavailable.  Move as many as possible to Suggests anduse conditionally.* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘RCAS’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking loading without being on the library search path ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... OK* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking contents of ‘data’ directory ... OK* checking data for non-ASCII characters ... OK* checking LazyData ... OK* checking data for ASCII and uncompressed saves ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OKExamples with CPU (user + system) or elapsed time > 5s                                  user system elapsedrunMotifDiscovery               38.231  0.827  33.752getMotifSummaryTable            15.812  0.338  53.627getFeatureBoundaryCoverageMulti 12.920  1.090  14.011calculateCoverageProfileList    11.816  0.325  12.142calculateCoverageProfile         9.009  0.388   9.399getTargetedGenesTable            7.704  0.872   8.534findDifferentialMotifs           7.365  0.435   7.226getTxdbFeaturesFromGRanges       7.141  0.506   7.643summarizeQueryRegionsMulti       7.107  0.247  21.941summarizeQueryRegions            6.361  0.128   6.490getFeatureBoundaryCoverage       4.691  0.526   5.218createDB                         3.007  0.215  18.136findEnrichedFunctions            0.573  0.096   6.235* checking for unstated dependencies in ‘tests’ ... OK* checking tests ...  Running ‘testthat.R’ OK* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking re-building of vignette outputs ... OK* checking PDF version of manual ... OK* DONEStatus: OK

################################################################################################################################################################## Running command:######   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL RCAS###############################################################################################################################################################* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’* installing *source* package ‘RCAS’ ...** this is package ‘RCAS’ version ‘1.36.0’** using staged installation** R** data*** moving datasets to lazyload DB** inst** byte-compile and prepare package for lazy loadingWarning: replacing previous import ‘Biostrings::pattern’ by ‘grid::pattern’ when loading ‘genomation’** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary locationWarning: replacing previous import ‘Biostrings::pattern’ by ‘grid::pattern’ when loading ‘genomation’** testing if installed package can be loaded from final locationWarning: replacing previous import ‘Biostrings::pattern’ by ‘grid::pattern’ when loading ‘genomation’** testing if installed package keeps a record of temporary installation path* DONE (RCAS)

R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"Copyright (C) 2025 The R Foundation for Statistical ComputingPlatform: x86_64-pc-linux-gnuR is free software and comes with ABSOLUTELY NO WARRANTY.You are welcome to redistribute it under certain conditions.Type 'license()' or 'licence()' for distribution details.R is a collaborative project with many contributors.Type 'contributors()' for more information and'citation()' on how to cite R or R packages in publications.Type 'demo()' for some demos, 'help()' for on-line help, or'help.start()' for an HTML browser interface to help.Type 'q()' to quit R.> library(testthat)> library(RCAS)Loading required package: plotlyLoading required package: ggplot2Attaching package: 'plotly'The following object is masked from 'package:ggplot2':    last_plotThe following object is masked from 'package:stats':    filterThe following object is masked from 'package:graphics':    layoutLoading required package: DTLoading required package: data.tableWarning message:replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'genomation' > > test_check("RCAS")[ FAIL 0 | WARN 9936 | SKIP 0 | PASS 48 ][ FAIL 0 | WARN 9936 | SKIP 0 | PASS 48 ]> > proc.time()   user  system elapsed  88.912   3.832  92.396