This page was generated on 2025-12-15 12:08 -0500 (Mon, 15 Dec 2025).
CHECK results for PepsNMR on kjohnson1
To the developers/maintainers of the PepsNMR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PepsNMR.git to reflect on this report. SeeTroubleshooting Build Report for more information. - Use the followingRenviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. SeeRenviron.bioc for more information.
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raw results
Summary
| Package: PepsNMR |
| Version: 1.28.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PepsNMR_1.28.0.tar.gz |
| StartedAt: 2025-12-13 17:44:35 -0500 (Sat, 13 Dec 2025) |
| EndedAt: 2025-12-13 17:58:41 -0500 (Sat, 13 Dec 2025) |
| EllapsedTime: 845.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PepsNMR.Rcheck |
| Warnings: 0 |
Command output
################################################################################################################################################################## Running command:###### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PepsNMR_1.28.0.tar.gz###############################################################################################################################################################* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/PepsNMR.Rcheck’* using R version 4.5.2 Patched (2025-11-04 r88984)* using platform: aarch64-apple-darwin20* R was compiled by Apple clang version 16.0.0 (clang-1600.0.26.6) GNU Fortran (GCC) 14.2.0* running under: macOS Ventura 13.7.8* using session charset: UTF-8* using option ‘--no-vignettes’* checking for file ‘PepsNMR/DESCRIPTION’ ... OK* checking extension type ... Package* this is package ‘PepsNMR’ version ‘1.28.0’* package encoding: UTF-8* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘PepsNMR’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... OK* checking Rd files ... NOTEcheckRd: (-1) Normalization.Rd:47: Escaped LaTeX specials: \&* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OKExamples with CPU (user + system) or elapsed time > 5s user system elapsedPEPSNMR-package 220.681 22.538 375.989PreprocessingChain 214.947 23.679 336.330Warping 8.012 2.015 12.968* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking running R code from vignettes ... SKIPPED* checking re-building of vignette outputs ... SKIPPED* checking PDF version of manual ... OK* DONEStatus: 1 NOTESee ‘/Users/biocbuild/bbs-3.22-bioc/meat/PepsNMR.Rcheck/00check.log’for details.
Installation output
PepsNMR.Rcheck/00install.out
################################################################################################################################################################## Running command:###### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL PepsNMR###############################################################################################################################################################* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’* installing *source* package ‘PepsNMR’ ...** this is package ‘PepsNMR’ version ‘1.28.0’** using staged installation** R** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (PepsNMR)
Tests output
Example timings
PepsNMR.Rcheck/PepsNMR-Ex.timings
| name | user | system | elapsed |
|
| Apodization | 0.748 | 0.046 | 1.062 | |
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| BaselineCorrection | 0.677 | 0.080 | 1.219 | |
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| Bucketing | 0.060 | 0.002 | 0.096 | |
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| Draw | 1.571 | 0.059 | 2.642 | |
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| DrawPCA | 1.089 | 0.027 | 1.756 | |
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| DrawSignal | 0.766 | 0.018 | 1.154 | |
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| FirstOrderPhaseCorrection | 0.049 | 0.006 | 0.080 | |
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| FourierTransform | 0.030 | 0.006 | 0.057 | |
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| GroupDelayCorrection | 0.064 | 0.009 | 0.104 | |
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| InternalReferencing | 0.027 | 0.004 | 0.055 | |
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| NegativeValuesZeroing | 0.026 | 0.006 | 0.047 | |
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| Normalization | 0.012 | 0.001 | 0.013 | |
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| PEPSNMR-package | 220.681 | 22.538 | 375.989 | |
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| PreprocessingChain | 214.947 | 23.679 | 336.330 | |
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| ReadFids | 0.257 | 0.066 | 0.405 | |
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| RegionRemoval | 0.011 | 0.001 | 0.012 | |
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| SolventSuppression | 0.132 | 0.052 | 0.253 | |
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| Warping | 8.012 | 2.015 | 12.968 | |
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| WindowSelection | 0.024 | 0.002 | 0.031 | |
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| ZeroFilling | 0.094 | 0.004 | 0.123 | |
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| ZeroOrderPhaseCorrection | 0.078 | 0.047 | 0.148 | |
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| ZoneAggregation | 0.317 | 0.055 | 0.458 | |
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