Movatterモバイル変換

################################################################################################################################################################## Running command:######   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:PANR.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings PANR_1.56.0.tar.gz###############################################################################################################################################################* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/PANR.Rcheck’* using R version 4.5.2 (2025-10-31)* using platform: x86_64-pc-linux-gnu* R was compiled by    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0* running under: Ubuntu 24.04.3 LTS* using session charset: UTF-8* checking for file ‘PANR/DESCRIPTION’ ... OK* checking extension type ... Package* this is package ‘PANR’ version ‘1.56.0’* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘PANR’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking loading without being on the library search path ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... NOTESNR2p,BetaMixture-numeric_Or_integer: no visible global function  definition for ‘runif’SNR2p,BetaMixture-numeric_Or_integer: no visible global function  definition for ‘pbeta’p2SNR,BetaMixture-numeric_Or_integer: no visible global function  definition for ‘qbeta’Undefined global functions or variables:  pbeta qbeta runifConsider adding  importFrom("stats", "pbeta", "qbeta", "runif")to your NAMESPACE file.* checking Rd files ... NOTEcheckRd: (-1) assoScore.Rd:33: Lost braces    33 | a logical value to switch on (if \code{TRUE}) or off {if \code{FALSE}} detailed       |                                                      ^checkRd: (-1) buildPAN.Rd:27: Lost braces    27 | a logical value to switch on (if \code{TRUE}) or off {if \code{FALSE}} detailed       |                                                      ^checkRd: (-1) exportPAN.Rd:34: Lost braces    34 | a logical value to switch on (if \code{TRUE}) or off {if \code{FALSE}} detailed       |                                                      ^checkRd: (-1) fitBM.Rd:28: Lost braces    28 | a logical value to switch on (if \code{TRUE}) or off {if \code{FALSE}} detailed       |                                                      ^checkRd: (-1) fitNULL.Rd:37: Lost braces    37 | a logical value to switch on (if \code{TRUE}) or off {if \code{FALSE}} detailed       |                                                      ^checkRd: (-1) infer.Rd:27: Lost braces    27 | a logical value to switch on (if \code{TRUE}) or off {if \code{FALSE}} detailed       |                                                      ^checkRd: (-1) pvclustModule.Rd:38: Lost braces    38 | a logical value to switch on (if \code{TRUE}) or off {if \code{FALSE}} detailed       |                                                      ^checkRd: (-1) viewNestedModules.Rd:30: Lost braces    30 | a logical value to switch on (if \code{TRUE}) or off {if \code{FALSE}} detailed       |                                                      ^checkRd: (-1) viewPAN.Rd:33: Lost braces    33 | a logical value to switch on (if \code{TRUE}) or off {if \code{FALSE}} detailed       |                                                      ^* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking contents of ‘data’ directory ... OK* checking data for non-ASCII characters ... OK* checking data for ASCII and uncompressed saves ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OKExamples with CPU (user + system) or elapsed time > 5s         user system elapsedfitNULL 8.258  0.071    8.33* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking re-building of vignette outputs ... OK* checking PDF version of manual ... OK* DONEStatus: 2 NOTEsSee  ‘/home/biocbuild/bbs-3.22-bioc/meat/PANR.Rcheck/00check.log’for details.

################################################################################################################################################################## Running command:######   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL PANR###############################################################################################################################################################* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’* installing *source* package ‘PANR’ ...** this is package ‘PANR’ version ‘1.56.0’** using staged installation** R** data** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (PANR)