| Back toMultiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-12-15 12:09 -0500 (Mon, 15 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4882 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4673 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" | 4607 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4671 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package1471/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| NormqPCR 1.56.0 (landing page) James Perkins
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
| To the developers/maintainers of the NormqPCR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NormqPCR.git to reflect on this report. SeeTroubleshooting Build Report for more information. - Use the followingRenviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. SeeRenviron.bioc for more information. - See Martin Grigorov'sblog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: NormqPCR |
| Version: 1.56.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:NormqPCR.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings NormqPCR_1.56.0.tar.gz |
| StartedAt: 2025-12-12 13:09:42 -0000 (Fri, 12 Dec 2025) |
| EndedAt: 2025-12-12 13:12:11 -0000 (Fri, 12 Dec 2025) |
| EllapsedTime: 148.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: NormqPCR.Rcheck |
| Warnings: 0 |
################################################################################################################################################################## Running command:###### /home/biocbuild/R/R/bin/R CMD check --install=check:NormqPCR.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings NormqPCR_1.56.0.tar.gz###############################################################################################################################################################* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/NormqPCR.Rcheck’* using R version 4.5.0 (2025-04-11)* using platform: aarch64-unknown-linux-gnu* R was compiled by aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0* running under: openEuler 24.03 (LTS)* using session charset: UTF-8* using option ‘--no-vignettes’* checking for file ‘NormqPCR/DESCRIPTION’ ... OK* this is package ‘NormqPCR’ version ‘1.56.0’* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘NormqPCR’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking loading without being on the library search path ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... NOTECqValues,CyclesSet: no visible binding for global variable ‘l5’Undefined global functions or variables: l5* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking contents of ‘data’ directory ... OK* checking data for non-ASCII characters ... OK* checking LazyData ... OK* checking data for ASCII and uncompressed saves ... OK* checking installed files from ‘inst/doc’ ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OKExamples with CPU (user + system) or elapsed time > 5s user system elapsedCqValues 39.863 0.431 47.776* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking running R code from vignettes ... SKIPPED* checking re-building of vignette outputs ... SKIPPED* checking PDF version of manual ... OK* DONEStatus: 1 NOTESee ‘/home/biocbuild/bbs-3.22-bioc/meat/NormqPCR.Rcheck/00check.log’for details.
NormqPCR.Rcheck/00install.out
################################################################################################################################################################## Running command:###### /home/biocbuild/R/R/bin/R CMD INSTALL NormqPCR###############################################################################################################################################################* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’* installing *source* package ‘NormqPCR’ ...** this is package ‘NormqPCR’ version ‘1.56.0’** using staged installation** R** data*** moving datasets to lazyload DB** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (NormqPCR)
NormqPCR.Rcheck/NormqPCR-Ex.timings
| name | user | system | elapsed | |
| Bladder | 0.017 | 0.000 | 0.017 | |
| BladderRepro | 0.006 | 0.000 | 0.006 | |
| Colon | 0.003 | 0.004 | 0.007 | |
| ComputeNRQs | 0.207 | 0.001 | 0.240 | |
| CqValues | 39.863 | 0.431 | 47.776 | |
| NormqPCR-package | 0.001 | 0.000 | 0.001 | |
| combineTechReps | 0.066 | 0.000 | 0.110 | |
| combineTechRepsSD | 0.098 | 0.000 | 0.098 | |
| deltaCt | 0.092 | 0.000 | 0.093 | |
| deltaDeltaCt | 0.110 | 0.000 | 0.112 | |
| geNorm | 0.007 | 0.000 | 0.008 | |
| geomMean | 0.000 | 0.000 | 0.001 | |
| makeAllNAs | 0.094 | 0.000 | 0.095 | |
| makeAllNewVal | 0.105 | 0.000 | 0.105 | |
| replaceAboveCutOff | 0.087 | 0.000 | 0.087 | |
| replaceNAs | 0.091 | 0.000 | 0.176 | |
| selectHKs | 0.036 | 0.000 | 0.072 | |
| stabMeasureM | 0.159 | 0.004 | 0.328 | |
| stabMeasureRho | 0.133 | 0.000 | 0.270 | |