This page was generated on 2025-12-15 12:05 -0500 (Mon, 15 Dec 2025).
CHECK results for NTW on nebbiolo2
To the developers/maintainers of the NTW package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NTW.git to reflect on this report. SeeTroubleshooting Build Report for more information. - Use the followingRenviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. SeeRenviron.bioc for more information.
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raw results
Summary
| Package: NTW |
| Version: 1.60.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:NTW.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings NTW_1.60.0.tar.gz |
| StartedAt: 2025-12-12 03:02:21 -0500 (Fri, 12 Dec 2025) |
| EndedAt: 2025-12-12 03:02:55 -0500 (Fri, 12 Dec 2025) |
| EllapsedTime: 34.0 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: NTW.Rcheck |
| Warnings: 1 |
Command output
################################################################################################################################################################## Running command:###### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:NTW.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings NTW_1.60.0.tar.gz###############################################################################################################################################################* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/NTW.Rcheck’* using R version 4.5.2 (2025-10-31)* using platform: x86_64-pc-linux-gnu* R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0* running under: Ubuntu 24.04.3 LTS* using session charset: UTF-8* checking for file ‘NTW/DESCRIPTION’ ... OK* checking extension type ... Package* this is package ‘NTW’ version ‘1.60.0’* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘NTW’ can be installed ... WARNINGFound the following significant warnings: Note: break used in wrong context: no loop is visible See ‘/home/biocbuild/bbs-3.22-bioc/meat/NTW.Rcheck/00install.out’ for details.Information on the location(s) of code generating the ‘Note’s can beobtained by re-running with environment variable R_KEEP_PKG_SOURCE setto ‘yes’.* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking loading without being on the library search path ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... OK* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking contents of ‘data’ directory ... OK* checking data for non-ASCII characters ... OK* checking data for ASCII and uncompressed saves ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OKExamples with CPU (user + system) or elapsed time > 5s user system elapsedNTW 6.568 0.001 6.57* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking re-building of vignette outputs ... OK* checking PDF version of manual ... OK* DONEStatus: 1 WARNINGSee ‘/home/biocbuild/bbs-3.22-bioc/meat/NTW.Rcheck/00check.log’for details.
Installation output
NTW.Rcheck/00install.out
################################################################################################################################################################## Running command:###### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL NTW###############################################################################################################################################################* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’* installing *source* package ‘NTW’ ...** this is package ‘NTW’ version ‘1.60.0’** using staged installation** R** data** inst** byte-compile and prepare package for lazy loadingNote: break used in wrong context: no loop is visible ** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (NTW)
Tests output
Example timings
NTW.Rcheck/NTW-Ex.timings
| name | user | system | elapsed |
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| A.estimation.Srow | 0.113 | 0.010 | 0.124 | |
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| AP.estimation.Srow | 1.307 | 0.001 | 1.309 | |
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| NTW | 6.568 | 0.001 | 6.570 | |
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| P.preestimation | 0.001 | 0.001 | 0.002 | |
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| comb.matrix | 0.000 | 0.000 | 0.001 | |
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| sos.data | 0.004 | 0.000 | 0.003 | |
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