Movatterモバイル変換

################################################################################################################################################################## Running command:######   /home/biocbuild/R/R/bin/R CMD check --install=check:MWASTools.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings MWASTools_1.34.0.tar.gz###############################################################################################################################################################* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/MWASTools.Rcheck’* using R version 4.5.0 (2025-04-11)* using platform: aarch64-unknown-linux-gnu* R was compiled by    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0    GNU Fortran (GCC) 14.2.0* running under: openEuler 24.03 (LTS)* using session charset: UTF-8* using option ‘--no-vignettes’* checking for file ‘MWASTools/DESCRIPTION’ ... OK* checking extension type ... Package* this is package ‘MWASTools’ version ‘1.34.0’* package encoding: UTF-8* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘MWASTools’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... OK* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking loading without being on the library search path ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... NOTEJBA_binning: no visible binding for global variable ‘median’JBA_corDistribution: no visible global function definition for ‘ecdf’JBA_corDistribution: no visible binding for global variable ‘r.coeff’JBA_corDistribution: no visible binding for global variable ‘cum’JBA_mergeClusters: no visible binding for global variable ‘median’JBA_plotBins: no visible binding for global variable ‘limits’JBA_plotBins: no visible binding for global variable ‘value’JBA_plotBins: no visible binding for global variable ‘intensity’JBA_plotBins: no visible binding for global variable ‘mean_cor’JBA_plotBins: no visible binding for global variable ‘clean_mean’MWAS_heatmap: no visible binding for '<<-' assignment to ‘hr’MWAS_heatmap: no visible binding for global variable ‘hr’MWAS_scatterplotMS: no visible binding for global variable ‘logpval’QC_CV_scatterplot: no visible binding for global variable ‘abs.CV’Undefined global functions or variables:  abs.CV clean_mean cum ecdf hr intensity limits logpval mean_cor  median r.coeff valueConsider adding  importFrom("stats", "ecdf", "median")to your NAMESPACE file.* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking contents of ‘data’ directory ... OK* checking data for non-ASCII characters ... OK* checking LazyData ... OK* checking data for ASCII and uncompressed saves ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OKExamples with CPU (user + system) or elapsed time > 5s                   user system elapsedMWAS_bootstrapping 4.83  0.088   5.794* checking for unstated dependencies in ‘tests’ ... OK* checking tests ...  Running ‘runTests.R’ OK* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking running R code from vignettes ... SKIPPED* checking re-building of vignette outputs ... SKIPPED* checking PDF version of manual ... OK* DONEStatus: 1 NOTESee  ‘/home/biocbuild/bbs-3.22-bioc/meat/MWASTools.Rcheck/00check.log’for details.

################################################################################################################################################################## Running command:######   /home/biocbuild/R/R/bin/R CMD INSTALL MWASTools###############################################################################################################################################################* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’* installing *source* package ‘MWASTools’ ...** this is package ‘MWASTools’ version ‘1.34.0’** using staged installation** R** data*** moving datasets to lazyload DB** inst** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (MWASTools)

R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"Copyright (C) 2025 The R Foundation for Statistical ComputingPlatform: aarch64-unknown-linux-gnuR is free software and comes with ABSOLUTELY NO WARRANTY.You are welcome to redistribute it under certain conditions.Type 'license()' or 'licence()' for distribution details.R is a collaborative project with many contributors.Type 'contributors()' for more information and'citation()' on how to cite R or R packages in publications.Type 'demo()' for some demos, 'help()' for on-line help, or'help.start()' for an HTML browser interface to help.Type 'q()' to quit R.> BiocGenerics:::testPackage("MWASTools")506 samples will be included in the analysis506 samples will be included in the analysis506 samples will be included in the analysis506 samples will be included in the analysis506 samples will be included in the analysis506 samples will be included in the analysis506 samples will be included in the analysis506 samples will be included in the analysis506 samples will be included in the analysis506 samples will be included in the analysis10 QC samples were detectedCV summary:   % metabolite features with CV < 0.15 : 92   % metabolite features with CV < 0.3 : 99506 samples will be included in the analysis10 QC samples were detectedCV summary:   % metabolite features with CV < 0.15 : 92   % metabolite features with CV < 0.3 : 99RUNIT TEST PROTOCOL -- Fri Dec 12 13:03:44 2025 *********************************************** Number of test functions: 5 Number of errors: 0 Number of failures: 0  1 Test Suite : MWASTools RUnit Tests - 5 test functions, 0 errors, 0 failuresNumber of test functions: 5 Number of errors: 0 Number of failures: 0 There were 16 warnings (use warnings() to see them)> > proc.time()   user  system elapsed  13.564   0.606  17.173