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Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4882
merida1	macOS 12.7.6 Monterey	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4673
kjohnson1	macOS 13.7.5 Ventura	arm64	4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble"	4607
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4671
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BUILD BIN results for MOSim on kjohnson1

To the developers/maintainers of the MOSim package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MOSim.git to reflect on this report. SeeTroubleshooting Build Report for more information.
- Use the followingRenviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. SeeRenviron.bioc for more information.

raw results

Summary

Package: MOSim

Version: 2.6.0

Command: rm -rf MOSim.buildbin-libdir && mkdir MOSim.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MOSim_2.6.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R MOSim.buildbin-libdir

StartedAt: 2025-12-14 10:59:24 -0500 (Sun, 14 Dec 2025)

EndedAt: 2025-12-14 11:00:34 -0500 (Sun, 14 Dec 2025)

EllapsedTime: 70.0 seconds

RetCode: 0

Status: OK

PackageFile: MOSim_2.6.0.tgz

PackageFileSize: 6.904MiB

Command output

################################################################################################################################################################## Running command:######   rm -rf MOSim.buildbin-libdir && mkdir MOSim.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MOSim_2.6.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R MOSim.buildbin-libdir###############################################################################################################################################################>>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=MOSim.buildbin-libdir MOSim_2.6.0.tar.gz'>>>>>>> * installing *source* package ‘MOSim’ ...** this is package ‘MOSim’ version ‘2.6.0’** using staged installation** libsusing C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’using SDK: ‘MacOSX11.3.1.sdk’clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c Random_number.cpp -o Random_number.oclang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o MOSim.so Random_number.o -F/Library/Frameworks/R.framework/.. -framework Rinstalling to /Users/biocbuild/bbs-3.22-bioc/meat/MOSim.buildbin-libdir/00LOCK-MOSim/00new/MOSim/libs** R** data** inst** byte-compile and prepare package for lazy loadingWarning: multiple methods tables found for ‘seqnames’Warning: replacing previous import ‘dplyr::count’ by ‘matrixStats::count’ when loading ‘MOSim’Creating a new generic function for ‘simulate’ in package ‘MOSim’** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary locationWarning: multiple methods tables found for ‘seqnames’Warning: replacing previous import ‘dplyr::count’ by ‘matrixStats::count’ when loading ‘MOSim’** checking absolute paths in shared objects and dynamic libraries** testing if installed package can be loaded from final locationWarning: multiple methods tables found for ‘seqnames’Warning: replacing previous import ‘dplyr::count’ by ‘matrixStats::count’ when loading ‘MOSim’** testing if installed package keeps a record of temporary installation path* DONE (MOSim)>>>>>>> >>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR MOSim.buildbin-libdir/MOSim/libs/MOSim.so>>>>>>> >>>>>>> Paths before fix:MOSim.buildbin-libdir/MOSim/libs/MOSim.so:MOSim.so (compatibility version 0.0.0, current version 0.0.0)/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.2)/usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 905.6.0)/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)>>>>>>> Fix with install_name_tool:install_name_tool -change "/usr/local/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libgcc_s.1.1.dylib" "MOSim.buildbin-libdir/MOSim/libs/MOSim.so"install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libgfortran.5.dylib" "MOSim.buildbin-libdir/MOSim/libs/MOSim.so"install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libquadmath.0.dylib" "MOSim.buildbin-libdir/MOSim/libs/MOSim.so">>>>>>> Paths after fix:MOSim.buildbin-libdir/MOSim/libs/MOSim.so:MOSim.so (compatibility version 0.0.0, current version 0.0.0)/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.2)/usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 905.6.0)/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)