This page was generated on 2025-12-15 12:05 -0500 (Mon, 15 Dec 2025).
CHECK results for MGFM on nebbiolo2
To the developers/maintainers of the MGFM package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MGFM.git to reflect on this report. SeeTroubleshooting Build Report for more information. - Use the followingRenviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. SeeRenviron.bioc for more information.
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raw results
Summary
| Package: MGFM |
| Version: 1.44.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:MGFM.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings MGFM_1.44.0.tar.gz |
| StartedAt: 2025-12-12 02:14:39 -0500 (Fri, 12 Dec 2025) |
| EndedAt: 2025-12-12 02:16:29 -0500 (Fri, 12 Dec 2025) |
| EllapsedTime: 110.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MGFM.Rcheck |
| Warnings: 0 |
Command output
################################################################################################################################################################## Running command:###### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:MGFM.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings MGFM_1.44.0.tar.gz###############################################################################################################################################################* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/MGFM.Rcheck’* using R version 4.5.2 (2025-10-31)* using platform: x86_64-pc-linux-gnu* R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0* running under: Ubuntu 24.04.3 LTS* using session charset: UTF-8* checking for file ‘MGFM/DESCRIPTION’ ... OK* checking extension type ... Package* this is package ‘MGFM’ version ‘1.44.0’* checking package namespace information ... OK* checking package dependencies ... OK* checking if this is a source package ... OK* checking if there is a namespace ... OK* checking for hidden files and directories ... OK* checking for portable file names ... OK* checking for sufficient/correct file permissions ... OK* checking whether package ‘MGFM’ can be installed ... OK* checking installed package size ... OK* checking package directory ... OK* checking ‘build’ directory ... OK* checking DESCRIPTION meta-information ... NOTEMalformed Description field: should contain one or more complete sentences.* checking top-level files ... OK* checking for left-over files ... OK* checking index information ... OK* checking package subdirectories ... OK* checking code files for non-ASCII characters ... OK* checking R files for syntax errors ... OK* checking whether the package can be loaded ... OK* checking whether the package can be loaded with stated dependencies ... OK* checking whether the package can be unloaded cleanly ... OK* checking whether the namespace can be loaded with stated dependencies ... OK* checking whether the namespace can be unloaded cleanly ... OK* checking loading without being on the library search path ... OK* checking dependencies in R code ... OK* checking S3 generic/method consistency ... OK* checking replacement functions ... OK* checking foreign function calls ... OK* checking R code for possible problems ... OK* checking Rd files ... OK* checking Rd metadata ... OK* checking Rd cross-references ... OK* checking for missing documentation entries ... OK* checking for code/documentation mismatches ... OK* checking Rd \usage sections ... OK* checking Rd contents ... OK* checking for unstated dependencies in examples ... OK* checking contents of ‘data’ directory ... OK* checking data for non-ASCII characters ... OK* checking LazyData ... OK* checking data for ASCII and uncompressed saves ... OK* checking files in ‘vignettes’ ... OK* checking examples ... OK* checking for unstated dependencies in vignettes ... OK* checking package vignettes ... OK* checking re-building of vignette outputs ... OK* checking PDF version of manual ... OK* DONEStatus: 1 NOTESee ‘/home/biocbuild/bbs-3.22-bioc/meat/MGFM.Rcheck/00check.log’for details.
Installation output
MGFM.Rcheck/00install.out
################################################################################################################################################################## Running command:###### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL MGFM###############################################################################################################################################################* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’* installing *source* package ‘MGFM’ ...** this is package ‘MGFM’ version ‘1.44.0’** using staged installation** R** data*** moving datasets to lazyload DB** byte-compile and prepare package for lazy loading** help*** installing help indices** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (MGFM)
Tests output
Example timings
MGFM.Rcheck/MGFM-Ex.timings
| name | user | system | elapsed |
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| ds2.mat | 0.001 | 0.001 | 0.002 | |
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| getHtmlpage | 3.699 | 0.049 | 3.748 | |
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| getMarkerGenes | 2.356 | 0.089 | 2.445 | |
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